Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia)
The draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) is presented. The complete genome assembly was of 2 713 207 bp with predicted completeness of 99.38%. Genome structural annotation revealed 2674...
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ftdoajarticles:oai:doaj.org/article:829fe2aab6d64af9a86f76c516afb6bc 2023-05-15T16:58:56+02:00 Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) A.A. Korzhenkov S.V. Toshchakov O.A. Podosokorskaya M.V. Patrushev I.V. Kublanov 2020-12-01T00:00:00Z https://doi.org/10.1016/j.dib.2020.106336 https://doaj.org/article/829fe2aab6d64af9a86f76c516afb6bc EN eng Elsevier http://www.sciencedirect.com/science/article/pii/S2352340920312294 https://doaj.org/toc/2352-3409 2352-3409 doi:10.1016/j.dib.2020.106336 https://doaj.org/article/829fe2aab6d64af9a86f76c516afb6bc Data in Brief, Vol 33, Iss , Pp 106336- (2020) Thermophiles CAZymes Caldanaerobacter Genome Extremophiles Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 article 2020 ftdoajarticles https://doi.org/10.1016/j.dib.2020.106336 2022-12-31T04:56:44Z The draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) is presented. The complete genome assembly was of 2 713 207 bp with predicted completeness of 99.38%. Genome structural annotation revealed 2674 protein-coding genes, 127 pseudogenes and 77 RNA genes. Pangenome analysis of 7 currently available high quality Caldanaerobacter spp. genomes including 1523vc revealed 4673 gene clusters. Of them, 1130 clusters formed a core genome of genus Caldanaerobacter. Of the rest 3543 Caldanaerobacter pangenome genes, 385 were exclusively represented in 1523vc genome. 101 of 2801 Caldanaerobacter CDS were found to be encoding carbohydrate-active enzymes (CAZymes). The majority of CAZymes were predicted to be involved in degradation of beta-linked polysaccharides as chitin, cellulose and hemicelluloses, reflecting the metabolism of strain 1523vc, isolated on cellulose. 5 of 101 CAZyme genes were found to be unique for the strain 1523vc and belonged to GH23, GT56, GH15 and two CE9 family proteins.The draft genome of strain 1523vc was deposited at DBJ/EMBL/GenBank under the accessions JABEQB000000000, PRJNA629090 and SAMN14766777 for Genome, Bioproject and Biosample, respectively. Article in Journal/Newspaper Kamchatka Directory of Open Access Journals: DOAJ Articles Data in Brief 33 106336 |
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Directory of Open Access Journals: DOAJ Articles |
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ftdoajarticles |
language |
English |
topic |
Thermophiles CAZymes Caldanaerobacter Genome Extremophiles Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 |
spellingShingle |
Thermophiles CAZymes Caldanaerobacter Genome Extremophiles Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 A.A. Korzhenkov S.V. Toshchakov O.A. Podosokorskaya M.V. Patrushev I.V. Kublanov Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
topic_facet |
Thermophiles CAZymes Caldanaerobacter Genome Extremophiles Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 |
description |
The draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) is presented. The complete genome assembly was of 2 713 207 bp with predicted completeness of 99.38%. Genome structural annotation revealed 2674 protein-coding genes, 127 pseudogenes and 77 RNA genes. Pangenome analysis of 7 currently available high quality Caldanaerobacter spp. genomes including 1523vc revealed 4673 gene clusters. Of them, 1130 clusters formed a core genome of genus Caldanaerobacter. Of the rest 3543 Caldanaerobacter pangenome genes, 385 were exclusively represented in 1523vc genome. 101 of 2801 Caldanaerobacter CDS were found to be encoding carbohydrate-active enzymes (CAZymes). The majority of CAZymes were predicted to be involved in degradation of beta-linked polysaccharides as chitin, cellulose and hemicelluloses, reflecting the metabolism of strain 1523vc, isolated on cellulose. 5 of 101 CAZyme genes were found to be unique for the strain 1523vc and belonged to GH23, GT56, GH15 and two CE9 family proteins.The draft genome of strain 1523vc was deposited at DBJ/EMBL/GenBank under the accessions JABEQB000000000, PRJNA629090 and SAMN14766777 for Genome, Bioproject and Biosample, respectively. |
format |
Article in Journal/Newspaper |
author |
A.A. Korzhenkov S.V. Toshchakov O.A. Podosokorskaya M.V. Patrushev I.V. Kublanov |
author_facet |
A.A. Korzhenkov S.V. Toshchakov O.A. Podosokorskaya M.V. Patrushev I.V. Kublanov |
author_sort |
A.A. Korzhenkov |
title |
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
title_short |
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
title_full |
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
title_fullStr |
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
title_full_unstemmed |
Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia) |
title_sort |
data on draft genome sequence of caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of uzon caldera, (kamchatka, russia) |
publisher |
Elsevier |
publishDate |
2020 |
url |
https://doi.org/10.1016/j.dib.2020.106336 https://doaj.org/article/829fe2aab6d64af9a86f76c516afb6bc |
genre |
Kamchatka |
genre_facet |
Kamchatka |
op_source |
Data in Brief, Vol 33, Iss , Pp 106336- (2020) |
op_relation |
http://www.sciencedirect.com/science/article/pii/S2352340920312294 https://doaj.org/toc/2352-3409 2352-3409 doi:10.1016/j.dib.2020.106336 https://doaj.org/article/829fe2aab6d64af9a86f76c516afb6bc |
op_doi |
https://doi.org/10.1016/j.dib.2020.106336 |
container_title |
Data in Brief |
container_volume |
33 |
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106336 |
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1766051074514354176 |