De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)

Red drum (Sciaenops ocellatus) is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the pot...

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Bibliographic Details
Published in:Data in Brief
Main Authors: Tracy A. Sherwood, Kevan L. Main, Dana L. Wetzel
Format: Article in Journal/Newspaper
Language:English
Published: Elsevier 2019
Subjects:
Computer applications to medicine. Medical informatics
R858-859.7
Science (General)
Q1-390
Red drum
Sciaenops ocellatus
Online Access:https://doi.org/10.1016/j.dib.2019.01.011
https://doaj.org/article/6f9bb578c11b48fcbdb388db078566b6
id ftdoajarticles:oai:doaj.org/article:6f9bb578c11b48fcbdb388db078566b6
record_format openpolar
spelling ftdoajarticles:oai:doaj.org/article:6f9bb578c11b48fcbdb388db078566b6 2023-05-15T18:05:53+02:00 De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus) Tracy A. Sherwood Kevan L. Main Dana L. Wetzel 2019-02-01T00:00:00Z https://doi.org/10.1016/j.dib.2019.01.011 https://doaj.org/article/6f9bb578c11b48fcbdb388db078566b6 EN eng Elsevier http://www.sciencedirect.com/science/article/pii/S2352340919300125 https://doaj.org/toc/2352-3409 2352-3409 doi:10.1016/j.dib.2019.01.011 https://doaj.org/article/6f9bb578c11b48fcbdb388db078566b6 Data in Brief, Vol 22, Iss , Pp 934-939 (2019) Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 article 2019 ftdoajarticles https://doi.org/10.1016/j.dib.2019.01.011 2022-12-31T01:19:25Z Red drum (Sciaenops ocellatus) is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the potential high economic value in both wild and aquaculture commercial fisheries the availability of transcriptomic data for red drum in public databases is limited. The data here represents the transcriptome profiles of three tissues: liver, testis and head kidney from red drum. The data was generated using Illumina high-throughput RNA sequencing, Trinity for de novo assembly and Blast2GO for annotation. Six individual libraries were pooled for sequencing of the transcriptome and the raw fastq reads have been deposited in the NCBI-SRA database (accession number SRP11690). Article in Journal/Newspaper Red drum Sciaenops ocellatus Directory of Open Access Journals: DOAJ Articles Data in Brief 22 934 939
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Computer applications to medicine. Medical informatics
R858-859.7
Science (General)
Q1-390
spellingShingle Computer applications to medicine. Medical informatics
R858-859.7
Science (General)
Q1-390
Tracy A. Sherwood
Kevan L. Main
Dana L. Wetzel
De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
topic_facet Computer applications to medicine. Medical informatics
R858-859.7
Science (General)
Q1-390
description Red drum (Sciaenops ocellatus) is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the potential high economic value in both wild and aquaculture commercial fisheries the availability of transcriptomic data for red drum in public databases is limited. The data here represents the transcriptome profiles of three tissues: liver, testis and head kidney from red drum. The data was generated using Illumina high-throughput RNA sequencing, Trinity for de novo assembly and Blast2GO for annotation. Six individual libraries were pooled for sequencing of the transcriptome and the raw fastq reads have been deposited in the NCBI-SRA database (accession number SRP11690).
format Article in Journal/Newspaper
author Tracy A. Sherwood
Kevan L. Main
Dana L. Wetzel
author_facet Tracy A. Sherwood
Kevan L. Main
Dana L. Wetzel
author_sort Tracy A. Sherwood
title De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
title_short De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
title_full De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
title_fullStr De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
title_full_unstemmed De novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (Sciaenops ocellatus)
title_sort de novo assembly and transcriptome dataset of liver, testis and head kidney from red drum (sciaenops ocellatus)
publisher Elsevier
publishDate 2019
url https://doi.org/10.1016/j.dib.2019.01.011
https://doaj.org/article/6f9bb578c11b48fcbdb388db078566b6
genre Red drum
Sciaenops ocellatus
genre_facet Red drum
Sciaenops ocellatus
op_source Data in Brief, Vol 22, Iss , Pp 934-939 (2019)
op_relation http://www.sciencedirect.com/science/article/pii/S2352340919300125
https://doaj.org/toc/2352-3409
2352-3409
doi:10.1016/j.dib.2019.01.011
https://doaj.org/article/6f9bb578c11b48fcbdb388db078566b6
op_doi https://doi.org/10.1016/j.dib.2019.01.011
container_title Data in Brief
container_volume 22
container_start_page 934
op_container_end_page 939
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