Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation
Abstract Although mitochondrial DNA has been widely used in phylogeography, evidence has emerged that factors such as climate, food availability, and environmental pressures that produce high levels of stress can exert a strong influence on mitochondrial genomes, to the point of promoting the persis...
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ftdoajarticles:oai:doaj.org/article:63a33dfa24fa4cc9bf45400d4573376e 2023-05-15T13:47:49+02:00 Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation D. Noll F. Leon D. Brandt P. Pistorius C. Le Bohec F. Bonadonna P. N. Trathan A. Barbosa A. Raya Rey G. P. M. Dantas R. C. K. Bowie E. Poulin J. A. Vianna 2022-03-01T00:00:00Z https://doi.org/10.1038/s41598-022-07562-0 https://doaj.org/article/63a33dfa24fa4cc9bf45400d4573376e EN eng Nature Portfolio https://doi.org/10.1038/s41598-022-07562-0 https://doaj.org/toc/2045-2322 doi:10.1038/s41598-022-07562-0 2045-2322 https://doaj.org/article/63a33dfa24fa4cc9bf45400d4573376e Scientific Reports, Vol 12, Iss 1, Pp 1-13 (2022) Medicine R Science Q article 2022 ftdoajarticles https://doi.org/10.1038/s41598-022-07562-0 2022-12-31T16:10:58Z Abstract Although mitochondrial DNA has been widely used in phylogeography, evidence has emerged that factors such as climate, food availability, and environmental pressures that produce high levels of stress can exert a strong influence on mitochondrial genomes, to the point of promoting the persistence of certain genotypes in order to compensate for the metabolic requirements of the local environment. As recently discovered, the gentoo penguins (Pygoscelis papua) comprise four highly divergent lineages across their distribution spanning the Antarctic and sub-Antarctic regions. Gentoo penguins therefore represent a suitable animal model to study adaptive processes across divergent environments. Based on 62 mitogenomes that we obtained from nine locations spanning all four gentoo penguin lineages, we demonstrated lineage-specific nucleotide substitutions for various genes, but only lineage-specific amino acid replacements for the ND1 and ND5 protein-coding genes. Purifying selection (dN/dS < 1) is the main driving force in the protein-coding genes that shape the diversity of mitogenomes in gentoo penguins. Positive selection (dN/dS > 1) was mostly present in codons of the Complex I (NADH genes), supported by two different codon-based methods at the ND1 and ND4 in the most divergent lineages, the eastern gentoo penguin from Crozet and Marion Islands and the southern gentoo penguin from Antarctica respectively. Additionally, ND5 and ATP6 were under selection in the branches of the phylogeny involving all gentoo penguins except the eastern lineage. Our study suggests that local adaptation of gentoo penguins has emerged as a response to environmental variability promoting the fixation of mitochondrial haplotypes in a non-random manner. Mitogenome adaptation is thus likely to have been associated with gentoo penguin diversification across the Southern Ocean and to have promoted their survival in extreme environments such as Antarctica. Such selective processes on the mitochondrial genome may also be responsible ... Article in Journal/Newspaper Antarc* Antarctic Antarctica Gentoo penguin Pygoscelis papua Southern Ocean Directory of Open Access Journals: DOAJ Articles Antarctic Southern Ocean The Antarctic Scientific Reports 12 1 |
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Medicine R Science Q |
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Medicine R Science Q D. Noll F. Leon D. Brandt P. Pistorius C. Le Bohec F. Bonadonna P. N. Trathan A. Barbosa A. Raya Rey G. P. M. Dantas R. C. K. Bowie E. Poulin J. A. Vianna Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
topic_facet |
Medicine R Science Q |
description |
Abstract Although mitochondrial DNA has been widely used in phylogeography, evidence has emerged that factors such as climate, food availability, and environmental pressures that produce high levels of stress can exert a strong influence on mitochondrial genomes, to the point of promoting the persistence of certain genotypes in order to compensate for the metabolic requirements of the local environment. As recently discovered, the gentoo penguins (Pygoscelis papua) comprise four highly divergent lineages across their distribution spanning the Antarctic and sub-Antarctic regions. Gentoo penguins therefore represent a suitable animal model to study adaptive processes across divergent environments. Based on 62 mitogenomes that we obtained from nine locations spanning all four gentoo penguin lineages, we demonstrated lineage-specific nucleotide substitutions for various genes, but only lineage-specific amino acid replacements for the ND1 and ND5 protein-coding genes. Purifying selection (dN/dS < 1) is the main driving force in the protein-coding genes that shape the diversity of mitogenomes in gentoo penguins. Positive selection (dN/dS > 1) was mostly present in codons of the Complex I (NADH genes), supported by two different codon-based methods at the ND1 and ND4 in the most divergent lineages, the eastern gentoo penguin from Crozet and Marion Islands and the southern gentoo penguin from Antarctica respectively. Additionally, ND5 and ATP6 were under selection in the branches of the phylogeny involving all gentoo penguins except the eastern lineage. Our study suggests that local adaptation of gentoo penguins has emerged as a response to environmental variability promoting the fixation of mitochondrial haplotypes in a non-random manner. Mitogenome adaptation is thus likely to have been associated with gentoo penguin diversification across the Southern Ocean and to have promoted their survival in extreme environments such as Antarctica. Such selective processes on the mitochondrial genome may also be responsible ... |
format |
Article in Journal/Newspaper |
author |
D. Noll F. Leon D. Brandt P. Pistorius C. Le Bohec F. Bonadonna P. N. Trathan A. Barbosa A. Raya Rey G. P. M. Dantas R. C. K. Bowie E. Poulin J. A. Vianna |
author_facet |
D. Noll F. Leon D. Brandt P. Pistorius C. Le Bohec F. Bonadonna P. N. Trathan A. Barbosa A. Raya Rey G. P. M. Dantas R. C. K. Bowie E. Poulin J. A. Vianna |
author_sort |
D. Noll |
title |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
title_short |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
title_full |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
title_fullStr |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
title_full_unstemmed |
Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
title_sort |
positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation |
publisher |
Nature Portfolio |
publishDate |
2022 |
url |
https://doi.org/10.1038/s41598-022-07562-0 https://doaj.org/article/63a33dfa24fa4cc9bf45400d4573376e |
geographic |
Antarctic Southern Ocean The Antarctic |
geographic_facet |
Antarctic Southern Ocean The Antarctic |
genre |
Antarc* Antarctic Antarctica Gentoo penguin Pygoscelis papua Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctica Gentoo penguin Pygoscelis papua Southern Ocean |
op_source |
Scientific Reports, Vol 12, Iss 1, Pp 1-13 (2022) |
op_relation |
https://doi.org/10.1038/s41598-022-07562-0 https://doaj.org/toc/2045-2322 doi:10.1038/s41598-022-07562-0 2045-2322 https://doaj.org/article/63a33dfa24fa4cc9bf45400d4573376e |
op_doi |
https://doi.org/10.1038/s41598-022-07562-0 |
container_title |
Scientific Reports |
container_volume |
12 |
container_issue |
1 |
_version_ |
1766247919440101376 |