A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters

Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where rel...

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Published in:PeerJ
Main Authors: Clara Jégousse, Pauline Vannier, René Groben, Frank Oliver Glöckner, Viggó Marteinsson
Format: Article in Journal/Newspaper
Language:English
Published: PeerJ Inc. 2021
Subjects:
R
Online Access:https://doi.org/10.7717/peerj.11112
https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4
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spelling ftdoajarticles:oai:doaj.org/article:632b1347d39c4818824ccdaadcb48fe4 2024-01-07T09:44:08+01:00 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters Clara Jégousse Pauline Vannier René Groben Frank Oliver Glöckner Viggó Marteinsson 2021-04-01T00:00:00Z https://doi.org/10.7717/peerj.11112 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 EN eng PeerJ Inc. https://peerj.com/articles/11112.pdf https://peerj.com/articles/11112/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.11112 2167-8359 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 PeerJ, Vol 9, p e11112 (2021) Metagenomics Metagenome-assembled genomes Iceland Bacteria Archaea Medicine R Biology (General) QH301-705.5 article 2021 ftdoajarticles https://doi.org/10.7717/peerj.11112 2023-12-10T01:51:39Z Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. Article in Journal/Newspaper Iceland Directory of Open Access Journals: DOAJ Articles PeerJ 9 e11112
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Metagenomics
Metagenome-assembled genomes
Iceland
Bacteria
Archaea
Medicine
R
Biology (General)
QH301-705.5
spellingShingle Metagenomics
Metagenome-assembled genomes
Iceland
Bacteria
Archaea
Medicine
R
Biology (General)
QH301-705.5
Clara Jégousse
Pauline Vannier
René Groben
Frank Oliver Glöckner
Viggó Marteinsson
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
topic_facet Metagenomics
Metagenome-assembled genomes
Iceland
Bacteria
Archaea
Medicine
R
Biology (General)
QH301-705.5
description Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome.
format Article in Journal/Newspaper
author Clara Jégousse
Pauline Vannier
René Groben
Frank Oliver Glöckner
Viggó Marteinsson
author_facet Clara Jégousse
Pauline Vannier
René Groben
Frank Oliver Glöckner
Viggó Marteinsson
author_sort Clara Jégousse
title A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_short A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_full A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_fullStr A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_full_unstemmed A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_sort total of 219 metagenome-assembled genomes of microorganisms from icelandic marine waters
publisher PeerJ Inc.
publishDate 2021
url https://doi.org/10.7717/peerj.11112
https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4
genre Iceland
genre_facet Iceland
op_source PeerJ, Vol 9, p e11112 (2021)
op_relation https://peerj.com/articles/11112.pdf
https://peerj.com/articles/11112/
https://doaj.org/toc/2167-8359
doi:10.7717/peerj.11112
2167-8359
https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4
op_doi https://doi.org/10.7717/peerj.11112
container_title PeerJ
container_volume 9
container_start_page e11112
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