A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where rel...
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ftdoajarticles:oai:doaj.org/article:632b1347d39c4818824ccdaadcb48fe4 2024-01-07T09:44:08+01:00 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters Clara Jégousse Pauline Vannier René Groben Frank Oliver Glöckner Viggó Marteinsson 2021-04-01T00:00:00Z https://doi.org/10.7717/peerj.11112 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 EN eng PeerJ Inc. https://peerj.com/articles/11112.pdf https://peerj.com/articles/11112/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.11112 2167-8359 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 PeerJ, Vol 9, p e11112 (2021) Metagenomics Metagenome-assembled genomes Iceland Bacteria Archaea Medicine R Biology (General) QH301-705.5 article 2021 ftdoajarticles https://doi.org/10.7717/peerj.11112 2023-12-10T01:51:39Z Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. Article in Journal/Newspaper Iceland Directory of Open Access Journals: DOAJ Articles PeerJ 9 e11112 |
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Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
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ftdoajarticles |
language |
English |
topic |
Metagenomics Metagenome-assembled genomes Iceland Bacteria Archaea Medicine R Biology (General) QH301-705.5 |
spellingShingle |
Metagenomics Metagenome-assembled genomes Iceland Bacteria Archaea Medicine R Biology (General) QH301-705.5 Clara Jégousse Pauline Vannier René Groben Frank Oliver Glöckner Viggó Marteinsson A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
topic_facet |
Metagenomics Metagenome-assembled genomes Iceland Bacteria Archaea Medicine R Biology (General) QH301-705.5 |
description |
Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. |
format |
Article in Journal/Newspaper |
author |
Clara Jégousse Pauline Vannier René Groben Frank Oliver Glöckner Viggó Marteinsson |
author_facet |
Clara Jégousse Pauline Vannier René Groben Frank Oliver Glöckner Viggó Marteinsson |
author_sort |
Clara Jégousse |
title |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_short |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_fullStr |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full_unstemmed |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_sort |
total of 219 metagenome-assembled genomes of microorganisms from icelandic marine waters |
publisher |
PeerJ Inc. |
publishDate |
2021 |
url |
https://doi.org/10.7717/peerj.11112 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 |
genre |
Iceland |
genre_facet |
Iceland |
op_source |
PeerJ, Vol 9, p e11112 (2021) |
op_relation |
https://peerj.com/articles/11112.pdf https://peerj.com/articles/11112/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.11112 2167-8359 https://doaj.org/article/632b1347d39c4818824ccdaadcb48fe4 |
op_doi |
https://doi.org/10.7717/peerj.11112 |
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PeerJ |
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9 |
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e11112 |
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1787425454583447552 |