Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evoluti...
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ftdoajarticles:oai:doaj.org/article:61ba86d281ed4282838c095a11a67338 2023-12-03T10:12:36+01:00 Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration Wei Song Lingzhi Li Hongliang Huang Fenfang Chen Ming Zhao Keji Jiang Fengying Zhang Chunyan Ma Xuezhong Chen Lingbo Ma 2017-12-01T00:00:00Z https://doi.org/10.1080/23802359.2017.1361361 https://doaj.org/article/61ba86d281ed4282838c095a11a67338 EN eng Taylor & Francis Group http://dx.doi.org/10.1080/23802359.2017.1361361 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2017.1361361 https://doaj.org/article/61ba86d281ed4282838c095a11a67338 Mitochondrial DNA. Part B. Resources, Vol 2, Iss 2, Pp 526-527 (2017) gymnodraco acuticeps mito-genome genome structure phylogenetic Genetics QH426-470 article 2017 ftdoajarticles https://doi.org/10.1080/23802359.2017.1361361 2023-11-05T01:37:50Z Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987 bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies. Article in Journal/Newspaper Antarc* Antarctic Southern Ocean Directory of Open Access Journals: DOAJ Articles Antarctic Southern Ocean Mitochondrial DNA Part B 2 2 526 527 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
gymnodraco acuticeps mito-genome genome structure phylogenetic Genetics QH426-470 |
spellingShingle |
gymnodraco acuticeps mito-genome genome structure phylogenetic Genetics QH426-470 Wei Song Lingzhi Li Hongliang Huang Fenfang Chen Ming Zhao Keji Jiang Fengying Zhang Chunyan Ma Xuezhong Chen Lingbo Ma Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
topic_facet |
gymnodraco acuticeps mito-genome genome structure phylogenetic Genetics QH426-470 |
description |
Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987 bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies. |
format |
Article in Journal/Newspaper |
author |
Wei Song Lingzhi Li Hongliang Huang Fenfang Chen Ming Zhao Keji Jiang Fengying Zhang Chunyan Ma Xuezhong Chen Lingbo Ma |
author_facet |
Wei Song Lingzhi Li Hongliang Huang Fenfang Chen Ming Zhao Keji Jiang Fengying Zhang Chunyan Ma Xuezhong Chen Lingbo Ma |
author_sort |
Wei Song |
title |
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
title_short |
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
title_full |
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
title_fullStr |
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
title_full_unstemmed |
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration |
title_sort |
isolation and characterization of the mitochondrial genome of gymnodraco acuticeps (perciformes: bathydraconidae) with phylogenetic consideration |
publisher |
Taylor & Francis Group |
publishDate |
2017 |
url |
https://doi.org/10.1080/23802359.2017.1361361 https://doaj.org/article/61ba86d281ed4282838c095a11a67338 |
geographic |
Antarctic Southern Ocean |
geographic_facet |
Antarctic Southern Ocean |
genre |
Antarc* Antarctic Southern Ocean |
genre_facet |
Antarc* Antarctic Southern Ocean |
op_source |
Mitochondrial DNA. Part B. Resources, Vol 2, Iss 2, Pp 526-527 (2017) |
op_relation |
http://dx.doi.org/10.1080/23802359.2017.1361361 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2017.1361361 https://doaj.org/article/61ba86d281ed4282838c095a11a67338 |
op_doi |
https://doi.org/10.1080/23802359.2017.1361361 |
container_title |
Mitochondrial DNA Part B |
container_volume |
2 |
container_issue |
2 |
container_start_page |
526 |
op_container_end_page |
527 |
_version_ |
1784259187312689152 |