Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.

The diagnosis of canine echinococcosis can be a challenge in surveillance studies because there is no perfect gold standard that can be used routinely. However, unknown test specificities and sensitivities can be overcome using latent-class analysis with appropriate data.We utilised a set of faecal...

Full description

Bibliographic Details
Published in:PLoS Neglected Tropical Diseases
Main Authors: Sonja Hartnack, Christine M Budke, Philip S Craig, Qiu Jiamin, Belgees Boufana, Maiza Campos-Ponce, Paul R Torgerson
Format: Article in Journal/Newspaper
Language:English
Published: Public Library of Science (PLoS) 2013
Subjects:
Online Access:https://doi.org/10.1371/journal.pntd.0002068
https://doaj.org/article/59dc5ed141f44fb0a6ca1935cb67156b
id ftdoajarticles:oai:doaj.org/article:59dc5ed141f44fb0a6ca1935cb67156b
record_format openpolar
spelling ftdoajarticles:oai:doaj.org/article:59dc5ed141f44fb0a6ca1935cb67156b 2023-05-15T15:15:18+02:00 Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs. Sonja Hartnack Christine M Budke Philip S Craig Qiu Jiamin Belgees Boufana Maiza Campos-Ponce Paul R Torgerson 2013-01-01T00:00:00Z https://doi.org/10.1371/journal.pntd.0002068 https://doaj.org/article/59dc5ed141f44fb0a6ca1935cb67156b EN eng Public Library of Science (PLoS) http://europepmc.org/articles/PMC3573084?pdf=render https://doaj.org/toc/1935-2727 https://doaj.org/toc/1935-2735 1935-2727 1935-2735 doi:10.1371/journal.pntd.0002068 https://doaj.org/article/59dc5ed141f44fb0a6ca1935cb67156b PLoS Neglected Tropical Diseases, Vol 7, Iss 2, p e2068 (2013) Arctic medicine. Tropical medicine RC955-962 Public aspects of medicine RA1-1270 article 2013 ftdoajarticles https://doi.org/10.1371/journal.pntd.0002068 2022-12-30T20:51:29Z The diagnosis of canine echinococcosis can be a challenge in surveillance studies because there is no perfect gold standard that can be used routinely. However, unknown test specificities and sensitivities can be overcome using latent-class analysis with appropriate data.We utilised a set of faecal and purge samples used previously to explore the epidemiology of canine echinococcosis on the Tibetan plateau. Previously only the purge results were reported and analysed in a largely deterministic way. In the present study, additional diagnostic tests of copro-PCR and copro-antigen ELISA were undertaken on the faecal samples. This enabled a Bayesian analysis in a latent-class model to examine the diagnostic performance of a genus specific copro-antigen ELISA, species-specific copro-PCR and arecoline purgation. Potential covariates including co-infection with Taenia, age and sex of the dog were also explored. The dependence structure of these diagnostic tests could also be analysed.The most parsimonious result, indicated by deviance-information criteria, suggested that co-infection with Taenia spp. was a significant covariate with the Echinococcus infection. The copro-PCRs had estimated sensitivities of 89% and 84% respectively for the diagnoses of Echinococcus multilocularis and E. granulosus. The specificities for the copro-PCR were estimated at 93 and 83% respectively. Copro-antigen ELISA had sensitivities of 55 and 57% for the diagnosis of E. multilocularis and E. granulosus and specificities of 71 and 69% respectively. Arecoline purgation with an assumed specificity of 100% had estimated sensitivities of 76% and 85% respectively.This study also shows that incorporating diagnostic uncertainty, in other words assuming no perfect gold standard, and including potential covariates like sex or Taenia co-infection into the epidemiological analysis may give different results than if the diagnosis of infection status is assumed to be deterministic and this approach should therefore be used whenever possible. Article in Journal/Newspaper Arctic Directory of Open Access Journals: DOAJ Articles Arctic PLoS Neglected Tropical Diseases 7 2 e2068
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Arctic medicine. Tropical medicine
RC955-962
Public aspects of medicine
RA1-1270
spellingShingle Arctic medicine. Tropical medicine
RC955-962
Public aspects of medicine
RA1-1270
Sonja Hartnack
Christine M Budke
Philip S Craig
Qiu Jiamin
Belgees Boufana
Maiza Campos-Ponce
Paul R Torgerson
Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
topic_facet Arctic medicine. Tropical medicine
RC955-962
Public aspects of medicine
RA1-1270
description The diagnosis of canine echinococcosis can be a challenge in surveillance studies because there is no perfect gold standard that can be used routinely. However, unknown test specificities and sensitivities can be overcome using latent-class analysis with appropriate data.We utilised a set of faecal and purge samples used previously to explore the epidemiology of canine echinococcosis on the Tibetan plateau. Previously only the purge results were reported and analysed in a largely deterministic way. In the present study, additional diagnostic tests of copro-PCR and copro-antigen ELISA were undertaken on the faecal samples. This enabled a Bayesian analysis in a latent-class model to examine the diagnostic performance of a genus specific copro-antigen ELISA, species-specific copro-PCR and arecoline purgation. Potential covariates including co-infection with Taenia, age and sex of the dog were also explored. The dependence structure of these diagnostic tests could also be analysed.The most parsimonious result, indicated by deviance-information criteria, suggested that co-infection with Taenia spp. was a significant covariate with the Echinococcus infection. The copro-PCRs had estimated sensitivities of 89% and 84% respectively for the diagnoses of Echinococcus multilocularis and E. granulosus. The specificities for the copro-PCR were estimated at 93 and 83% respectively. Copro-antigen ELISA had sensitivities of 55 and 57% for the diagnosis of E. multilocularis and E. granulosus and specificities of 71 and 69% respectively. Arecoline purgation with an assumed specificity of 100% had estimated sensitivities of 76% and 85% respectively.This study also shows that incorporating diagnostic uncertainty, in other words assuming no perfect gold standard, and including potential covariates like sex or Taenia co-infection into the epidemiological analysis may give different results than if the diagnosis of infection status is assumed to be deterministic and this approach should therefore be used whenever possible.
format Article in Journal/Newspaper
author Sonja Hartnack
Christine M Budke
Philip S Craig
Qiu Jiamin
Belgees Boufana
Maiza Campos-Ponce
Paul R Torgerson
author_facet Sonja Hartnack
Christine M Budke
Philip S Craig
Qiu Jiamin
Belgees Boufana
Maiza Campos-Ponce
Paul R Torgerson
author_sort Sonja Hartnack
title Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
title_short Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
title_full Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
title_fullStr Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
title_full_unstemmed Latent-class methods to evaluate diagnostics tests for Echinococcus infections in dogs.
title_sort latent-class methods to evaluate diagnostics tests for echinococcus infections in dogs.
publisher Public Library of Science (PLoS)
publishDate 2013
url https://doi.org/10.1371/journal.pntd.0002068
https://doaj.org/article/59dc5ed141f44fb0a6ca1935cb67156b
geographic Arctic
geographic_facet Arctic
genre Arctic
genre_facet Arctic
op_source PLoS Neglected Tropical Diseases, Vol 7, Iss 2, p e2068 (2013)
op_relation http://europepmc.org/articles/PMC3573084?pdf=render
https://doaj.org/toc/1935-2727
https://doaj.org/toc/1935-2735
1935-2727
1935-2735
doi:10.1371/journal.pntd.0002068
https://doaj.org/article/59dc5ed141f44fb0a6ca1935cb67156b
op_doi https://doi.org/10.1371/journal.pntd.0002068
container_title PLoS Neglected Tropical Diseases
container_volume 7
container_issue 2
container_start_page e2068
_version_ 1766345666493153280