Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)

Abstract Background Under the threat of climate change populations can disperse, acclimatise or evolve in order to avoid fitness loss. In light of this, it is important to understand neutral gene flow patterns as a measure of dispersal potential, but also adaptive genetic variation as a measure of e...

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Published in:BMC Evolutionary Biology
Main Authors: Anna P. Muir, Stanislas F. Dubois, Rebecca E. Ross, Louise B. Firth, Antony M. Knights, Fernando P. Lima, Rui Seabra, Erwan Corre, Gildas Le Corguillé, Flavia L. D. Nunes
Format: Article in Journal/Newspaper
Language:English
Published: BMC 2020
Subjects:
Online Access:https://doi.org/10.1186/s12862-020-01658-9
https://doaj.org/article/549a3941cceb4dc2b03ea3ccf554a652
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spelling ftdoajarticles:oai:doaj.org/article:549a3941cceb4dc2b03ea3ccf554a652 2023-05-15T17:25:19+02:00 Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.) Anna P. Muir Stanislas F. Dubois Rebecca E. Ross Louise B. Firth Antony M. Knights Fernando P. Lima Rui Seabra Erwan Corre Gildas Le Corguillé Flavia L. D. Nunes 2020-08-01T00:00:00Z https://doi.org/10.1186/s12862-020-01658-9 https://doaj.org/article/549a3941cceb4dc2b03ea3ccf554a652 EN eng BMC http://link.springer.com/article/10.1186/s12862-020-01658-9 https://doaj.org/toc/1471-2148 doi:10.1186/s12862-020-01658-9 1471-2148 https://doaj.org/article/549a3941cceb4dc2b03ea3ccf554a652 BMC Evolutionary Biology, Vol 20, Iss 1, Pp 1-16 (2020) RADseq Ocean circulation modelling Adaptation Marine invertebrate Larval dispersal Evolution QH359-425 article 2020 ftdoajarticles https://doi.org/10.1186/s12862-020-01658-9 2022-12-31T12:48:21Z Abstract Background Under the threat of climate change populations can disperse, acclimatise or evolve in order to avoid fitness loss. In light of this, it is important to understand neutral gene flow patterns as a measure of dispersal potential, but also adaptive genetic variation as a measure of evolutionary potential. In order to assess genetic variation and how this relates to environment in the honeycomb worm (Sabellaria alveolata (L.)), a reef-building polychaete that supports high biodiversity, we carried out RAD sequencing using individuals from along its complete latitudinal range. Patterns of neutral population genetic structure were compared to larval dispersal as predicted by ocean circulation modelling, and outlier analyses and genotype-environment association tests were used to attempt to identify loci under selection in relation to local temperature data. Results We genotyped 482 filtered SNPs, from 68 individuals across nine sites, 27 of which were identified as outliers using BAYESCAN and ARLEQUIN. All outlier loci were potentially under balancing selection, despite previous evidence of local adaptation in the system. Limited gene flow was observed among reef-sites (FST = 0.28 ± 0.10), in line with the low dispersal potential identified by the larval dispersal models. The North Atlantic reef emerged as a distinct population and this was linked to high local larval retention and the effect of the North Atlantic Current on dispersal. Conclusions As an isolated population, with limited potential for natural genetic or demographic augmentation from other reefs, the North Atlantic site warrants conservation attention in order to preserve not only this species, but above all the crucial functional ecological roles that are associated with their bioconstructions. Our study highlights the utility of using seascape genomics to identify populations of conservation concern. Article in Journal/Newspaper north atlantic current North Atlantic Directory of Open Access Journals: DOAJ Articles BMC Evolutionary Biology 20 1
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic RADseq
Ocean circulation modelling
Adaptation
Marine invertebrate
Larval dispersal
Evolution
QH359-425
spellingShingle RADseq
Ocean circulation modelling
Adaptation
Marine invertebrate
Larval dispersal
Evolution
QH359-425
Anna P. Muir
Stanislas F. Dubois
Rebecca E. Ross
Louise B. Firth
Antony M. Knights
Fernando P. Lima
Rui Seabra
Erwan Corre
Gildas Le Corguillé
Flavia L. D. Nunes
Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
topic_facet RADseq
Ocean circulation modelling
Adaptation
Marine invertebrate
Larval dispersal
Evolution
QH359-425
description Abstract Background Under the threat of climate change populations can disperse, acclimatise or evolve in order to avoid fitness loss. In light of this, it is important to understand neutral gene flow patterns as a measure of dispersal potential, but also adaptive genetic variation as a measure of evolutionary potential. In order to assess genetic variation and how this relates to environment in the honeycomb worm (Sabellaria alveolata (L.)), a reef-building polychaete that supports high biodiversity, we carried out RAD sequencing using individuals from along its complete latitudinal range. Patterns of neutral population genetic structure were compared to larval dispersal as predicted by ocean circulation modelling, and outlier analyses and genotype-environment association tests were used to attempt to identify loci under selection in relation to local temperature data. Results We genotyped 482 filtered SNPs, from 68 individuals across nine sites, 27 of which were identified as outliers using BAYESCAN and ARLEQUIN. All outlier loci were potentially under balancing selection, despite previous evidence of local adaptation in the system. Limited gene flow was observed among reef-sites (FST = 0.28 ± 0.10), in line with the low dispersal potential identified by the larval dispersal models. The North Atlantic reef emerged as a distinct population and this was linked to high local larval retention and the effect of the North Atlantic Current on dispersal. Conclusions As an isolated population, with limited potential for natural genetic or demographic augmentation from other reefs, the North Atlantic site warrants conservation attention in order to preserve not only this species, but above all the crucial functional ecological roles that are associated with their bioconstructions. Our study highlights the utility of using seascape genomics to identify populations of conservation concern.
format Article in Journal/Newspaper
author Anna P. Muir
Stanislas F. Dubois
Rebecca E. Ross
Louise B. Firth
Antony M. Knights
Fernando P. Lima
Rui Seabra
Erwan Corre
Gildas Le Corguillé
Flavia L. D. Nunes
author_facet Anna P. Muir
Stanislas F. Dubois
Rebecca E. Ross
Louise B. Firth
Antony M. Knights
Fernando P. Lima
Rui Seabra
Erwan Corre
Gildas Le Corguillé
Flavia L. D. Nunes
author_sort Anna P. Muir
title Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
title_short Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
title_full Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
title_fullStr Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
title_full_unstemmed Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)
title_sort seascape genomics reveals population isolation in the reef-building honeycomb worm, sabellaria alveolata (l.)
publisher BMC
publishDate 2020
url https://doi.org/10.1186/s12862-020-01658-9
https://doaj.org/article/549a3941cceb4dc2b03ea3ccf554a652
genre north atlantic current
North Atlantic
genre_facet north atlantic current
North Atlantic
op_source BMC Evolutionary Biology, Vol 20, Iss 1, Pp 1-16 (2020)
op_relation http://link.springer.com/article/10.1186/s12862-020-01658-9
https://doaj.org/toc/1471-2148
doi:10.1186/s12862-020-01658-9
1471-2148
https://doaj.org/article/549a3941cceb4dc2b03ea3ccf554a652
op_doi https://doi.org/10.1186/s12862-020-01658-9
container_title BMC Evolutionary Biology
container_volume 20
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