Describing novel mitochondrial genomes of Antarctic amphipods
To date, only one mitogenome from an Antarctic amphipod has been published. Here, novel complete mitochondrial genomes (mitogenomes) of two morphospecies are assembled, namely, Charcotia amundseni and Eusirus giganteus. For the latter species, we have assembled two mitogenomes from different genetic...
Published in: | Mitochondrial DNA Part B |
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Taylor & Francis Group
2022
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Online Access: | https://doi.org/10.1080/23802359.2022.2073837 https://doaj.org/article/4eebaa0af3a24f1496214acd146ec235 |
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ftdoajarticles:oai:doaj.org/article:4eebaa0af3a24f1496214acd146ec235 2023-12-03T10:12:05+01:00 Describing novel mitochondrial genomes of Antarctic amphipods Louraine Salabao Tim Plevoets Bruno Frédérich Gilles Lepoint Marc Kochzius Isa Schön 2022-05-01T00:00:00Z https://doi.org/10.1080/23802359.2022.2073837 https://doaj.org/article/4eebaa0af3a24f1496214acd146ec235 EN eng Taylor & Francis Group http://dx.doi.org/10.1080/23802359.2022.2073837 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2022.2073837 https://doaj.org/article/4eebaa0af3a24f1496214acd146ec235 Mitochondrial DNA. Part B. Resources, Vol 7, Iss 5, Pp 810-818 (2022) amphipoda eusirus giganteus charcotia amundseni gene rearrangements mitochondrial genome nucleotide diversity Genetics QH426-470 article 2022 ftdoajarticles https://doi.org/10.1080/23802359.2022.2073837 2023-11-05T01:36:18Z To date, only one mitogenome from an Antarctic amphipod has been published. Here, novel complete mitochondrial genomes (mitogenomes) of two morphospecies are assembled, namely, Charcotia amundseni and Eusirus giganteus. For the latter species, we have assembled two mitogenomes from different genetic clades of this species. The lengths of Eusirus and Charcotia mitogenomes range from 15,534 to 15,619 base pairs and their mitogenomes are composed of 13 protein coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and 1 putative control region CR. Some tRNAs display aberrant structures suggesting that minimalization is also ongoing in amphipod mitogenomes. The novel mitogenomes of the two Antarctic species have features distinguishing them from other amphipod mitogenomes such as a lower AT-richness in the whole mitogenomes and a negative GC- skew in both strands of protein coding genes. The genetically most variable mitochondrial regions of amphipods are nad6 and atp8, while cox1 shows low nucleotide diversity among closely and more distantly related species. In comparison to the pancrustacean mitochondrial ground pattern, E. giganteus shows a translocation of the nad1 gene, while cytb and nad6 genes are translocated in C. amundseni. Phylogenetic analysis based on mitogenomes illustrates that Eusirus and Charcotia cluster together with other species belonging to the same amphipod superfamilies. In the absence of reference nuclear genomes, mitogenomes can be useful to develop markers for studying population genetics or evolutionary relationships at higher taxonomic levels. Article in Journal/Newspaper Antarc* Antarctic Directory of Open Access Journals: DOAJ Articles Antarctic Giganteus ENVELOPE(62.500,62.500,-67.567,-67.567) Mitochondrial DNA Part B 7 5 810 818 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
amphipoda eusirus giganteus charcotia amundseni gene rearrangements mitochondrial genome nucleotide diversity Genetics QH426-470 |
spellingShingle |
amphipoda eusirus giganteus charcotia amundseni gene rearrangements mitochondrial genome nucleotide diversity Genetics QH426-470 Louraine Salabao Tim Plevoets Bruno Frédérich Gilles Lepoint Marc Kochzius Isa Schön Describing novel mitochondrial genomes of Antarctic amphipods |
topic_facet |
amphipoda eusirus giganteus charcotia amundseni gene rearrangements mitochondrial genome nucleotide diversity Genetics QH426-470 |
description |
To date, only one mitogenome from an Antarctic amphipod has been published. Here, novel complete mitochondrial genomes (mitogenomes) of two morphospecies are assembled, namely, Charcotia amundseni and Eusirus giganteus. For the latter species, we have assembled two mitogenomes from different genetic clades of this species. The lengths of Eusirus and Charcotia mitogenomes range from 15,534 to 15,619 base pairs and their mitogenomes are composed of 13 protein coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and 1 putative control region CR. Some tRNAs display aberrant structures suggesting that minimalization is also ongoing in amphipod mitogenomes. The novel mitogenomes of the two Antarctic species have features distinguishing them from other amphipod mitogenomes such as a lower AT-richness in the whole mitogenomes and a negative GC- skew in both strands of protein coding genes. The genetically most variable mitochondrial regions of amphipods are nad6 and atp8, while cox1 shows low nucleotide diversity among closely and more distantly related species. In comparison to the pancrustacean mitochondrial ground pattern, E. giganteus shows a translocation of the nad1 gene, while cytb and nad6 genes are translocated in C. amundseni. Phylogenetic analysis based on mitogenomes illustrates that Eusirus and Charcotia cluster together with other species belonging to the same amphipod superfamilies. In the absence of reference nuclear genomes, mitogenomes can be useful to develop markers for studying population genetics or evolutionary relationships at higher taxonomic levels. |
format |
Article in Journal/Newspaper |
author |
Louraine Salabao Tim Plevoets Bruno Frédérich Gilles Lepoint Marc Kochzius Isa Schön |
author_facet |
Louraine Salabao Tim Plevoets Bruno Frédérich Gilles Lepoint Marc Kochzius Isa Schön |
author_sort |
Louraine Salabao |
title |
Describing novel mitochondrial genomes of Antarctic amphipods |
title_short |
Describing novel mitochondrial genomes of Antarctic amphipods |
title_full |
Describing novel mitochondrial genomes of Antarctic amphipods |
title_fullStr |
Describing novel mitochondrial genomes of Antarctic amphipods |
title_full_unstemmed |
Describing novel mitochondrial genomes of Antarctic amphipods |
title_sort |
describing novel mitochondrial genomes of antarctic amphipods |
publisher |
Taylor & Francis Group |
publishDate |
2022 |
url |
https://doi.org/10.1080/23802359.2022.2073837 https://doaj.org/article/4eebaa0af3a24f1496214acd146ec235 |
long_lat |
ENVELOPE(62.500,62.500,-67.567,-67.567) |
geographic |
Antarctic Giganteus |
geographic_facet |
Antarctic Giganteus |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_source |
Mitochondrial DNA. Part B. Resources, Vol 7, Iss 5, Pp 810-818 (2022) |
op_relation |
http://dx.doi.org/10.1080/23802359.2022.2073837 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2022.2073837 https://doaj.org/article/4eebaa0af3a24f1496214acd146ec235 |
op_doi |
https://doi.org/10.1080/23802359.2022.2073837 |
container_title |
Mitochondrial DNA Part B |
container_volume |
7 |
container_issue |
5 |
container_start_page |
810 |
op_container_end_page |
818 |
_version_ |
1784258609750736896 |