Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe

Morphology-based identification of North Atlantic Sebastes has long been controversial and misidentification may produce misleading data, with cascading consequences that negatively affect fisheries management and seafood labelling. North Atlantic Sebastes comprises of four species, commonly known a...

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Published in:PeerJ
Main Authors: Peter Shum, Lauren Moore, Christophe Pampoulie, Cristina Di Muri, Sara Vandamme, Stefano Mariani
Format: Article in Journal/Newspaper
Language:English
Published: PeerJ Inc. 2017
Subjects:
COI
R
Online Access:https://doi.org/10.7717/peerj.3746
https://doaj.org/article/4bf60445a5b04e1e8c5d7db0990ac4e5
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spelling ftdoajarticles:oai:doaj.org/article:4bf60445a5b04e1e8c5d7db0990ac4e5 2024-01-07T09:45:03+01:00 Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe Peter Shum Lauren Moore Christophe Pampoulie Cristina Di Muri Sara Vandamme Stefano Mariani 2017-10-01T00:00:00Z https://doi.org/10.7717/peerj.3746 https://doaj.org/article/4bf60445a5b04e1e8c5d7db0990ac4e5 EN eng PeerJ Inc. https://peerj.com/articles/3746.pdf https://peerj.com/articles/3746/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.3746 2167-8359 https://doaj.org/article/4bf60445a5b04e1e8c5d7db0990ac4e5 PeerJ, Vol 5, p e3746 (2017) Sebastes Redfish Barcoding Mislabelling Seafood COI Medicine R Biology (General) QH301-705.5 article 2017 ftdoajarticles https://doi.org/10.7717/peerj.3746 2023-12-10T01:49:45Z Morphology-based identification of North Atlantic Sebastes has long been controversial and misidentification may produce misleading data, with cascading consequences that negatively affect fisheries management and seafood labelling. North Atlantic Sebastes comprises of four species, commonly known as ‘redfish’, but little is known about the number, identity and labelling accuracy of redfish species sold across Europe. We used a molecular approach to identify redfish species from ‘blind’ specimens to evaluate the performance of the Barcode of Life (BOLD) and Genbank databases, as well as carrying out a market product accuracy survey from retailers across Europe. The conventional BOLD approach proved ambiguous, and phylogenetic analysis based on mtDNA control region sequences provided a higher resolution for species identification. By sampling market products from four countries, we found the presence of two species of redfish (S. norvegicus and S. mentella) and one unidentified Pacific rockfish marketed in Europe. Furthermore, public databases revealed the existence of inaccurate reference sequences, likely stemming from species misidentification from previous studies, which currently hinders the efficacy of DNA methods for the identification of Sebastes market samples. Article in Journal/Newspaper North Atlantic Directory of Open Access Journals: DOAJ Articles Pacific PeerJ 5 e3746
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Sebastes
Redfish
Barcoding
Mislabelling
Seafood
COI
Medicine
R
Biology (General)
QH301-705.5
spellingShingle Sebastes
Redfish
Barcoding
Mislabelling
Seafood
COI
Medicine
R
Biology (General)
QH301-705.5
Peter Shum
Lauren Moore
Christophe Pampoulie
Cristina Di Muri
Sara Vandamme
Stefano Mariani
Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
topic_facet Sebastes
Redfish
Barcoding
Mislabelling
Seafood
COI
Medicine
R
Biology (General)
QH301-705.5
description Morphology-based identification of North Atlantic Sebastes has long been controversial and misidentification may produce misleading data, with cascading consequences that negatively affect fisheries management and seafood labelling. North Atlantic Sebastes comprises of four species, commonly known as ‘redfish’, but little is known about the number, identity and labelling accuracy of redfish species sold across Europe. We used a molecular approach to identify redfish species from ‘blind’ specimens to evaluate the performance of the Barcode of Life (BOLD) and Genbank databases, as well as carrying out a market product accuracy survey from retailers across Europe. The conventional BOLD approach proved ambiguous, and phylogenetic analysis based on mtDNA control region sequences provided a higher resolution for species identification. By sampling market products from four countries, we found the presence of two species of redfish (S. norvegicus and S. mentella) and one unidentified Pacific rockfish marketed in Europe. Furthermore, public databases revealed the existence of inaccurate reference sequences, likely stemming from species misidentification from previous studies, which currently hinders the efficacy of DNA methods for the identification of Sebastes market samples.
format Article in Journal/Newspaper
author Peter Shum
Lauren Moore
Christophe Pampoulie
Cristina Di Muri
Sara Vandamme
Stefano Mariani
author_facet Peter Shum
Lauren Moore
Christophe Pampoulie
Cristina Di Muri
Sara Vandamme
Stefano Mariani
author_sort Peter Shum
title Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
title_short Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
title_full Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
title_fullStr Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
title_full_unstemmed Harnessing mtDNA variation to resolve ambiguity in ‘Redfish’ sold in Europe
title_sort harnessing mtdna variation to resolve ambiguity in ‘redfish’ sold in europe
publisher PeerJ Inc.
publishDate 2017
url https://doi.org/10.7717/peerj.3746
https://doaj.org/article/4bf60445a5b04e1e8c5d7db0990ac4e5
geographic Pacific
geographic_facet Pacific
genre North Atlantic
genre_facet North Atlantic
op_source PeerJ, Vol 5, p e3746 (2017)
op_relation https://peerj.com/articles/3746.pdf
https://peerj.com/articles/3746/
https://doaj.org/toc/2167-8359
doi:10.7717/peerj.3746
2167-8359
https://doaj.org/article/4bf60445a5b04e1e8c5d7db0990ac4e5
op_doi https://doi.org/10.7717/peerj.3746
container_title PeerJ
container_volume 5
container_start_page e3746
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