Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs
Abstract Background The susceptibility of microbes such as Plasmodium falciparum to drugs is measured in vitro as the concentration of the drug achieving 50% of maximum effect (IC 50 ); values from a population are summarized as geometric means. For antimalarial drugs, as well as for antibiotics, as...
Published in: | Malaria Journal |
---|---|
Main Authors: | , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
BMC
2007
|
Subjects: | |
Online Access: | https://doi.org/10.1186/1475-2875-6-156 https://doaj.org/article/4b429bf1c09f465fa871a828efbb4f33 |
id |
ftdoajarticles:oai:doaj.org/article:4b429bf1c09f465fa871a828efbb4f33 |
---|---|
record_format |
openpolar |
spelling |
ftdoajarticles:oai:doaj.org/article:4b429bf1c09f465fa871a828efbb4f33 2023-05-15T15:12:30+02:00 Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs Vaillant Michel Olliaro Piero 2007-11-01T00:00:00Z https://doi.org/10.1186/1475-2875-6-156 https://doaj.org/article/4b429bf1c09f465fa871a828efbb4f33 EN eng BMC http://www.malariajournal.com/content/6/1/156 https://doaj.org/toc/1475-2875 doi:10.1186/1475-2875-6-156 1475-2875 https://doaj.org/article/4b429bf1c09f465fa871a828efbb4f33 Malaria Journal, Vol 6, Iss 1, p 156 (2007) Arctic medicine. Tropical medicine RC955-962 Infectious and parasitic diseases RC109-216 article 2007 ftdoajarticles https://doi.org/10.1186/1475-2875-6-156 2022-12-31T08:07:01Z Abstract Background The susceptibility of microbes such as Plasmodium falciparum to drugs is measured in vitro as the concentration of the drug achieving 50% of maximum effect (IC 50 ); values from a population are summarized as geometric means. For antimalarial drugs, as well as for antibiotics, assessing changes in microbe susceptibility over time under drug pressure would help inform treatment policy decisions, but no standard statistical method exists as yet. Methods A mixed model was generated on log e -transformed IC 50 values and calculated geometric least squares means (GLSM) with 90% confidence intervals (CIs). In order to compare IC 50 s between years, GLSM ratios (GLSMR) with 90%CIs were calculated and, when both limits of the 90%CIs were below or above 100%, the difference was considered statistically significant. Results were compared to those obtained from ANOVA and a generalized linear model (GLM). Results GLSMRs were more conservative than ANOVA and resulted in lower levels of statistical significance. The GLSMRs approach allowed for random effect and adjustment for multiple comparisons. GLM was limited in the number of year-to-year comparisons by the need for a single reference year. The three analyses yielded generally consistent results. Conclusion A robust analytical method can palliate inherent limitations of in vitro sensitivity testing. The random effects GLSMRs with adjustment for multiple comparisons and 90%CIs require only assumptions on the mixed model to be applied. Results are easy to display graphically and to interpret. The GLMSRs should be considered as an option for monitoring changes in drug susceptibility of P. falciparum malaria and other microbes. Article in Journal/Newspaper Arctic Directory of Open Access Journals: DOAJ Articles Arctic Malaria Journal 6 1 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Arctic medicine. Tropical medicine RC955-962 Infectious and parasitic diseases RC109-216 |
spellingShingle |
Arctic medicine. Tropical medicine RC955-962 Infectious and parasitic diseases RC109-216 Vaillant Michel Olliaro Piero Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
topic_facet |
Arctic medicine. Tropical medicine RC955-962 Infectious and parasitic diseases RC109-216 |
description |
Abstract Background The susceptibility of microbes such as Plasmodium falciparum to drugs is measured in vitro as the concentration of the drug achieving 50% of maximum effect (IC 50 ); values from a population are summarized as geometric means. For antimalarial drugs, as well as for antibiotics, assessing changes in microbe susceptibility over time under drug pressure would help inform treatment policy decisions, but no standard statistical method exists as yet. Methods A mixed model was generated on log e -transformed IC 50 values and calculated geometric least squares means (GLSM) with 90% confidence intervals (CIs). In order to compare IC 50 s between years, GLSM ratios (GLSMR) with 90%CIs were calculated and, when both limits of the 90%CIs were below or above 100%, the difference was considered statistically significant. Results were compared to those obtained from ANOVA and a generalized linear model (GLM). Results GLSMRs were more conservative than ANOVA and resulted in lower levels of statistical significance. The GLSMRs approach allowed for random effect and adjustment for multiple comparisons. GLM was limited in the number of year-to-year comparisons by the need for a single reference year. The three analyses yielded generally consistent results. Conclusion A robust analytical method can palliate inherent limitations of in vitro sensitivity testing. The random effects GLSMRs with adjustment for multiple comparisons and 90%CIs require only assumptions on the mixed model to be applied. Results are easy to display graphically and to interpret. The GLMSRs should be considered as an option for monitoring changes in drug susceptibility of P. falciparum malaria and other microbes. |
format |
Article in Journal/Newspaper |
author |
Vaillant Michel Olliaro Piero |
author_facet |
Vaillant Michel Olliaro Piero |
author_sort |
Vaillant Michel |
title |
Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
title_short |
Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
title_full |
Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
title_fullStr |
Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
title_full_unstemmed |
Geometric least squares means ratios for the analysis of Plasmodium falciparum in vitro susceptibility to antimalarial drugs |
title_sort |
geometric least squares means ratios for the analysis of plasmodium falciparum in vitro susceptibility to antimalarial drugs |
publisher |
BMC |
publishDate |
2007 |
url |
https://doi.org/10.1186/1475-2875-6-156 https://doaj.org/article/4b429bf1c09f465fa871a828efbb4f33 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic |
genre_facet |
Arctic |
op_source |
Malaria Journal, Vol 6, Iss 1, p 156 (2007) |
op_relation |
http://www.malariajournal.com/content/6/1/156 https://doaj.org/toc/1475-2875 doi:10.1186/1475-2875-6-156 1475-2875 https://doaj.org/article/4b429bf1c09f465fa871a828efbb4f33 |
op_doi |
https://doi.org/10.1186/1475-2875-6-156 |
container_title |
Malaria Journal |
container_volume |
6 |
container_issue |
1 |
_version_ |
1766343168382468096 |