Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes
Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and...
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ftdoajarticles:oai:doaj.org/article:3b1549f2b7c947b4a18061b38730d194 2023-05-15T17:45:01+02:00 Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes Christina Marie Rochus Elisabeth Jonas Anna M. Johansson 2020-03-01T00:00:00Z https://doi.org/10.1186/s12863-020-0827-8 https://doaj.org/article/3b1549f2b7c947b4a18061b38730d194 EN eng BMC http://link.springer.com/article/10.1186/s12863-020-0827-8 https://doaj.org/toc/1471-2156 doi:10.1186/s12863-020-0827-8 1471-2156 https://doaj.org/article/3b1549f2b7c947b4a18061b38730d194 BMC Genetics, Vol 21, Iss 1, Pp 1-9 (2020) Sheep Population structure North European short-tailed sheep SNP Genetics QH426-470 article 2020 ftdoajarticles https://doi.org/10.1186/s12863-020-0827-8 2022-12-31T01:47:48Z Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and Klövsjö sheep are from the middle of Sweden; Gotland and Gute sheep from Gotland, an island in the Baltic Sea; and Fjällnäs sheep from northern Sweden. We studied population structure by: principal component analysis (PCA), cluster-based analysis of admixture, and an estimated population tree. Results The analyses of the five Swedish breeds revealed that these breeds are five distinct breeds, while Gute and Gotland are more closely related to each other as seen in all analyses. All breeds had long branch lengths in the population tree indicating they’ve been subjected to drift. We repeated our analyses using 39 K SNP and including 50 K SNP genotypes from other European and southwestern Asian breeds from the Sheep HapMap project and 600 K SNP genotypes from a dataset of French sheep. Results arranged breeds into five groups: south-west Asia, south-west Europe, central Europe, north Europe and north European short-tailed sheep. Within this last group, Norwegian and Icelandic breeds, Finn and Romanov sheep, Scottish breeds, and Gute and Gotland sheep were more closely related while the remaining Swedish breeds and Ouessant sheep were distinct from all breeds and had longer branches in the population tree. Conclusions We showed population structure of five Swedish breeds and their structure within European and southwestern Asian breeds. Swedish breeds are unique, distinct breeds that have been subjected to drift but group with other north European short-tailed sheep. Article in Journal/Newspaper Northern Sweden Directory of Open Access Journals: DOAJ Articles Finn ENVELOPE(12.739,12.739,65.935,65.935) Fjällnäs ENVELOPE(17.731,17.731,65.641,65.641) BMC Genetics 21 1 |
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Directory of Open Access Journals: DOAJ Articles |
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English |
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Sheep Population structure North European short-tailed sheep SNP Genetics QH426-470 |
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Sheep Population structure North European short-tailed sheep SNP Genetics QH426-470 Christina Marie Rochus Elisabeth Jonas Anna M. Johansson Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
topic_facet |
Sheep Population structure North European short-tailed sheep SNP Genetics QH426-470 |
description |
Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and Klövsjö sheep are from the middle of Sweden; Gotland and Gute sheep from Gotland, an island in the Baltic Sea; and Fjällnäs sheep from northern Sweden. We studied population structure by: principal component analysis (PCA), cluster-based analysis of admixture, and an estimated population tree. Results The analyses of the five Swedish breeds revealed that these breeds are five distinct breeds, while Gute and Gotland are more closely related to each other as seen in all analyses. All breeds had long branch lengths in the population tree indicating they’ve been subjected to drift. We repeated our analyses using 39 K SNP and including 50 K SNP genotypes from other European and southwestern Asian breeds from the Sheep HapMap project and 600 K SNP genotypes from a dataset of French sheep. Results arranged breeds into five groups: south-west Asia, south-west Europe, central Europe, north Europe and north European short-tailed sheep. Within this last group, Norwegian and Icelandic breeds, Finn and Romanov sheep, Scottish breeds, and Gute and Gotland sheep were more closely related while the remaining Swedish breeds and Ouessant sheep were distinct from all breeds and had longer branches in the population tree. Conclusions We showed population structure of five Swedish breeds and their structure within European and southwestern Asian breeds. Swedish breeds are unique, distinct breeds that have been subjected to drift but group with other north European short-tailed sheep. |
format |
Article in Journal/Newspaper |
author |
Christina Marie Rochus Elisabeth Jonas Anna M. Johansson |
author_facet |
Christina Marie Rochus Elisabeth Jonas Anna M. Johansson |
author_sort |
Christina Marie Rochus |
title |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_short |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_full |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_fullStr |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_full_unstemmed |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_sort |
population structure of five native sheep breeds of sweden estimated with high density snp genotypes |
publisher |
BMC |
publishDate |
2020 |
url |
https://doi.org/10.1186/s12863-020-0827-8 https://doaj.org/article/3b1549f2b7c947b4a18061b38730d194 |
long_lat |
ENVELOPE(12.739,12.739,65.935,65.935) ENVELOPE(17.731,17.731,65.641,65.641) |
geographic |
Finn Fjällnäs |
geographic_facet |
Finn Fjällnäs |
genre |
Northern Sweden |
genre_facet |
Northern Sweden |
op_source |
BMC Genetics, Vol 21, Iss 1, Pp 1-9 (2020) |
op_relation |
http://link.springer.com/article/10.1186/s12863-020-0827-8 https://doaj.org/toc/1471-2156 doi:10.1186/s12863-020-0827-8 1471-2156 https://doaj.org/article/3b1549f2b7c947b4a18061b38730d194 |
op_doi |
https://doi.org/10.1186/s12863-020-0827-8 |
container_title |
BMC Genetics |
container_volume |
21 |
container_issue |
1 |
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1766147740012642304 |