Species Identification of Caviar Based on Multiple DNA Barcoding

This study aimed to explore the applicability of DNA barcoding for assessing the authenticity of caviar on the Chinese market. A set of universal COI primers and two sets of designed primers based on COI and D-loop genes were used to identify maternal species of samples from 21 batches of caviar. Th...

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Published in:Molecules
Main Authors: Qingqing Hu, Yingqiu Pan, Huili Xia, Kexin Yu, Yian Yao, Feng Guan
Format: Article in Journal/Newspaper
Language:English
Published: MDPI AG 2023
Subjects:
Online Access:https://doi.org/10.3390/molecules28135046
https://doaj.org/article/3401d9cf31ce4b92897922ff016cf1c9
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spelling ftdoajarticles:oai:doaj.org/article:3401d9cf31ce4b92897922ff016cf1c9 2023-07-30T03:55:24+02:00 Species Identification of Caviar Based on Multiple DNA Barcoding Qingqing Hu Yingqiu Pan Huili Xia Kexin Yu Yian Yao Feng Guan 2023-06-01T00:00:00Z https://doi.org/10.3390/molecules28135046 https://doaj.org/article/3401d9cf31ce4b92897922ff016cf1c9 EN eng MDPI AG https://www.mdpi.com/1420-3049/28/13/5046 https://doaj.org/toc/1420-3049 doi:10.3390/molecules28135046 1420-3049 https://doaj.org/article/3401d9cf31ce4b92897922ff016cf1c9 Molecules, Vol 28, Iss 5046, p 5046 (2023) DNA barcoding caviar COI gene D-loop gene species identification authenticity identification Organic chemistry QD241-441 article 2023 ftdoajarticles https://doi.org/10.3390/molecules28135046 2023-07-16T00:34:55Z This study aimed to explore the applicability of DNA barcoding for assessing the authenticity of caviar on the Chinese market. A set of universal COI primers and two sets of designed primers based on COI and D-loop genes were used to identify maternal species of samples from 21 batches of caviar. The results showed that the PCR products from three sets of primers had more than 98% similarity to the sequences in database. The COI gene could not distinguish sturgeons with closed genetic relationships, while D-loop gene could effectively improve the accuracy of DNA barcoding and was more suitable to the identification of interspecific sturgeon than the COI gene. The neighbor-joining dendrogram further confirmed the applicability and accuracy of COI and D-loop genes in identifying maternal relatives of caviar ( Acipenser baerii / Acipenser gueldenstaedtii / Acipenser schrenckii / Huso dauricus / Huso huso) . Despite the limitations of mitochondrial DNA in identifying hybrid sturgeon species, the presence of counterfeit caviar of non-sturgeon ingredients could be excluded. All the caviar samples were identified successfully as sturgeon species, but the mislabeling rate of species was 33.4%, indicating that there were illegal phenomena such as disorderly labeling, mislabeling, and adulteration on the market. Article in Journal/Newspaper Acipenser baerii Directory of Open Access Journals: DOAJ Articles Molecules 28 13 5046
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic DNA barcoding
caviar
COI gene
D-loop gene
species identification
authenticity identification
Organic chemistry
QD241-441
spellingShingle DNA barcoding
caviar
COI gene
D-loop gene
species identification
authenticity identification
Organic chemistry
QD241-441
Qingqing Hu
Yingqiu Pan
Huili Xia
Kexin Yu
Yian Yao
Feng Guan
Species Identification of Caviar Based on Multiple DNA Barcoding
topic_facet DNA barcoding
caviar
COI gene
D-loop gene
species identification
authenticity identification
Organic chemistry
QD241-441
description This study aimed to explore the applicability of DNA barcoding for assessing the authenticity of caviar on the Chinese market. A set of universal COI primers and two sets of designed primers based on COI and D-loop genes were used to identify maternal species of samples from 21 batches of caviar. The results showed that the PCR products from three sets of primers had more than 98% similarity to the sequences in database. The COI gene could not distinguish sturgeons with closed genetic relationships, while D-loop gene could effectively improve the accuracy of DNA barcoding and was more suitable to the identification of interspecific sturgeon than the COI gene. The neighbor-joining dendrogram further confirmed the applicability and accuracy of COI and D-loop genes in identifying maternal relatives of caviar ( Acipenser baerii / Acipenser gueldenstaedtii / Acipenser schrenckii / Huso dauricus / Huso huso) . Despite the limitations of mitochondrial DNA in identifying hybrid sturgeon species, the presence of counterfeit caviar of non-sturgeon ingredients could be excluded. All the caviar samples were identified successfully as sturgeon species, but the mislabeling rate of species was 33.4%, indicating that there were illegal phenomena such as disorderly labeling, mislabeling, and adulteration on the market.
format Article in Journal/Newspaper
author Qingqing Hu
Yingqiu Pan
Huili Xia
Kexin Yu
Yian Yao
Feng Guan
author_facet Qingqing Hu
Yingqiu Pan
Huili Xia
Kexin Yu
Yian Yao
Feng Guan
author_sort Qingqing Hu
title Species Identification of Caviar Based on Multiple DNA Barcoding
title_short Species Identification of Caviar Based on Multiple DNA Barcoding
title_full Species Identification of Caviar Based on Multiple DNA Barcoding
title_fullStr Species Identification of Caviar Based on Multiple DNA Barcoding
title_full_unstemmed Species Identification of Caviar Based on Multiple DNA Barcoding
title_sort species identification of caviar based on multiple dna barcoding
publisher MDPI AG
publishDate 2023
url https://doi.org/10.3390/molecules28135046
https://doaj.org/article/3401d9cf31ce4b92897922ff016cf1c9
genre Acipenser baerii
genre_facet Acipenser baerii
op_source Molecules, Vol 28, Iss 5046, p 5046 (2023)
op_relation https://www.mdpi.com/1420-3049/28/13/5046
https://doaj.org/toc/1420-3049
doi:10.3390/molecules28135046
1420-3049
https://doaj.org/article/3401d9cf31ce4b92897922ff016cf1c9
op_doi https://doi.org/10.3390/molecules28135046
container_title Molecules
container_volume 28
container_issue 13
container_start_page 5046
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