Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America.
Herein we tested the repeatability of phylogenetic inference based on high throughput sequencing by increased taxon sampling using our previously published techniques in the pitcher-plant mosquito, Wyeomyia smithii in North America. We sampled 25 natural populations drawn from different localities n...
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ftdoajarticles:oai:doaj.org/article:2a124c5eb8a0437b9af5392b762266a6 2023-05-15T16:41:02+02:00 Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. Clayton Merz Julian M Catchen Victor Hanson-Smith Kevin J Emerson William E Bradshaw Christina M Holzapfel 2013-01-01T00:00:00Z https://doi.org/10.1371/journal.pone.0072262 https://doaj.org/article/2a124c5eb8a0437b9af5392b762266a6 EN eng Public Library of Science (PLoS) http://europepmc.org/articles/PMC3765167?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0072262 https://doaj.org/article/2a124c5eb8a0437b9af5392b762266a6 PLoS ONE, Vol 8, Iss 9, p e72262 (2013) Medicine R Science Q article 2013 ftdoajarticles https://doi.org/10.1371/journal.pone.0072262 2022-12-31T12:25:49Z Herein we tested the repeatability of phylogenetic inference based on high throughput sequencing by increased taxon sampling using our previously published techniques in the pitcher-plant mosquito, Wyeomyia smithii in North America. We sampled 25 natural populations drawn from different localities nearby 21 previous collection localities and used these new data to construct a second, independent phylogeny, expressly to test the reproducibility of phylogenetic patterns. Comparison of trees between the two data sets based on both maximum parsimony and maximum likelihood with Bayesian posterior probabilities showed close correspondence in the grouping of the most southern populations into clear clades. However, discrepancies emerged, particularly in the middle of W. smithii's current range near the previous maximum extent of the Laurentide Ice Sheet, especially concerning the most recent common ancestor to mountain and northern populations. Combining all 46 populations from both studies into a single maximum parsimony tree and taking into account the post-glacial historical biogeography of associated flora provided an improved picture of W. smithii's range expansion in North America. In a more general sense, we propose that extensive taxon sampling, especially in areas of known geological disruption is key to a comprehensive approach to phylogenetics that leads to biologically meaningful phylogenetic inference. Article in Journal/Newspaper Ice Sheet Directory of Open Access Journals: DOAJ Articles PLoS ONE 8 9 e72262 |
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Directory of Open Access Journals: DOAJ Articles |
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ftdoajarticles |
language |
English |
topic |
Medicine R Science Q |
spellingShingle |
Medicine R Science Q Clayton Merz Julian M Catchen Victor Hanson-Smith Kevin J Emerson William E Bradshaw Christina M Holzapfel Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
topic_facet |
Medicine R Science Q |
description |
Herein we tested the repeatability of phylogenetic inference based on high throughput sequencing by increased taxon sampling using our previously published techniques in the pitcher-plant mosquito, Wyeomyia smithii in North America. We sampled 25 natural populations drawn from different localities nearby 21 previous collection localities and used these new data to construct a second, independent phylogeny, expressly to test the reproducibility of phylogenetic patterns. Comparison of trees between the two data sets based on both maximum parsimony and maximum likelihood with Bayesian posterior probabilities showed close correspondence in the grouping of the most southern populations into clear clades. However, discrepancies emerged, particularly in the middle of W. smithii's current range near the previous maximum extent of the Laurentide Ice Sheet, especially concerning the most recent common ancestor to mountain and northern populations. Combining all 46 populations from both studies into a single maximum parsimony tree and taking into account the post-glacial historical biogeography of associated flora provided an improved picture of W. smithii's range expansion in North America. In a more general sense, we propose that extensive taxon sampling, especially in areas of known geological disruption is key to a comprehensive approach to phylogenetics that leads to biologically meaningful phylogenetic inference. |
format |
Article in Journal/Newspaper |
author |
Clayton Merz Julian M Catchen Victor Hanson-Smith Kevin J Emerson William E Bradshaw Christina M Holzapfel |
author_facet |
Clayton Merz Julian M Catchen Victor Hanson-Smith Kevin J Emerson William E Bradshaw Christina M Holzapfel |
author_sort |
Clayton Merz |
title |
Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
title_short |
Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
title_full |
Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
title_fullStr |
Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
title_full_unstemmed |
Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America. |
title_sort |
replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, wyeomyia smithii, in north america. |
publisher |
Public Library of Science (PLoS) |
publishDate |
2013 |
url |
https://doi.org/10.1371/journal.pone.0072262 https://doaj.org/article/2a124c5eb8a0437b9af5392b762266a6 |
genre |
Ice Sheet |
genre_facet |
Ice Sheet |
op_source |
PLoS ONE, Vol 8, Iss 9, p e72262 (2013) |
op_relation |
http://europepmc.org/articles/PMC3765167?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0072262 https://doaj.org/article/2a124c5eb8a0437b9af5392b762266a6 |
op_doi |
https://doi.org/10.1371/journal.pone.0072262 |
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PLoS ONE |
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8 |
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9 |
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e72262 |
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1766031473480040448 |