Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions

The species composition of many groups of marine plankton appears well predicted by sea surface temperature (SST). Consequently, fossil plankton assemblages have been widely used to reconstruct past SST. Most applications of this approach make use of the highest possible taxonomic resolution. Howeve...

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Published in:Climate of the Past
Main Authors: L. Jonkers, M. Kučera
Format: Article in Journal/Newspaper
Language:English
Published: Copernicus Publications 2019
Subjects:
Online Access:https://doi.org/10.5194/cp-15-881-2019
https://doaj.org/article/1a07e5a4a46a4d1c8addc6d37c269357
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spelling ftdoajarticles:oai:doaj.org/article:1a07e5a4a46a4d1c8addc6d37c269357 2023-05-15T18:01:06+02:00 Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions L. Jonkers M. Kučera 2019-05-01T00:00:00Z https://doi.org/10.5194/cp-15-881-2019 https://doaj.org/article/1a07e5a4a46a4d1c8addc6d37c269357 EN eng Copernicus Publications https://www.clim-past.net/15/881/2019/cp-15-881-2019.pdf https://doaj.org/toc/1814-9324 https://doaj.org/toc/1814-9332 doi:10.5194/cp-15-881-2019 1814-9324 1814-9332 https://doaj.org/article/1a07e5a4a46a4d1c8addc6d37c269357 Climate of the Past, Vol 15, Pp 881-891 (2019) Environmental pollution TD172-193.5 Environmental protection TD169-171.8 Environmental sciences GE1-350 article 2019 ftdoajarticles https://doi.org/10.5194/cp-15-881-2019 2022-12-31T16:21:38Z The species composition of many groups of marine plankton appears well predicted by sea surface temperature (SST). Consequently, fossil plankton assemblages have been widely used to reconstruct past SST. Most applications of this approach make use of the highest possible taxonomic resolution. However, not all species are sensitive to temperature, and their distribution may be governed by other parameters. There are thus reasons to question the merit of including information about all species, both for transfer function performance and for its effect on reconstructions. Here we investigate the effect of species selection on planktonic foraminifera transfer functions. We assess species importance for transfer function models using a random forest technique and evaluate the performance of models with an increasing number of species. Irrespective of using models that use the entire training set (weighted averaging) or models that use only a subset of the training set (modern analogue technique), we find that the majority of foraminifera species does not carry useful information for temperature reconstruction. Less than one-third of the species in the training set is required to provide a temperature estimate with a prediction error comparable to a transfer function that uses all species in the training set. However, species selection matters for paleotemperature estimates. We find that transfer function models with a different number of species but with the same error may yield different reconstructions of sea surface temperature when applied to the same fossil assemblages. This ambiguity in the reconstructions implies that fossil assemblage change reflects a combination of temperature and other environmental factors. The contribution of the additional factors is site and time specific, indicating ecological and geological complexity in the formation of the sedimentary assemblages. The possibility of obtaining multiple different reconstructions from a single sediment record presents a previously unrecognized source ... Article in Journal/Newspaper Planktonic foraminifera Directory of Open Access Journals: DOAJ Articles Climate of the Past 15 3 881 891
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Environmental pollution
TD172-193.5
Environmental protection
TD169-171.8
Environmental sciences
GE1-350
spellingShingle Environmental pollution
TD172-193.5
Environmental protection
TD169-171.8
Environmental sciences
GE1-350
L. Jonkers
M. Kučera
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
topic_facet Environmental pollution
TD172-193.5
Environmental protection
TD169-171.8
Environmental sciences
GE1-350
description The species composition of many groups of marine plankton appears well predicted by sea surface temperature (SST). Consequently, fossil plankton assemblages have been widely used to reconstruct past SST. Most applications of this approach make use of the highest possible taxonomic resolution. However, not all species are sensitive to temperature, and their distribution may be governed by other parameters. There are thus reasons to question the merit of including information about all species, both for transfer function performance and for its effect on reconstructions. Here we investigate the effect of species selection on planktonic foraminifera transfer functions. We assess species importance for transfer function models using a random forest technique and evaluate the performance of models with an increasing number of species. Irrespective of using models that use the entire training set (weighted averaging) or models that use only a subset of the training set (modern analogue technique), we find that the majority of foraminifera species does not carry useful information for temperature reconstruction. Less than one-third of the species in the training set is required to provide a temperature estimate with a prediction error comparable to a transfer function that uses all species in the training set. However, species selection matters for paleotemperature estimates. We find that transfer function models with a different number of species but with the same error may yield different reconstructions of sea surface temperature when applied to the same fossil assemblages. This ambiguity in the reconstructions implies that fossil assemblage change reflects a combination of temperature and other environmental factors. The contribution of the additional factors is site and time specific, indicating ecological and geological complexity in the formation of the sedimentary assemblages. The possibility of obtaining multiple different reconstructions from a single sediment record presents a previously unrecognized source ...
format Article in Journal/Newspaper
author L. Jonkers
M. Kučera
author_facet L. Jonkers
M. Kučera
author_sort L. Jonkers
title Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
title_short Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
title_full Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
title_fullStr Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
title_full_unstemmed Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
title_sort sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
publisher Copernicus Publications
publishDate 2019
url https://doi.org/10.5194/cp-15-881-2019
https://doaj.org/article/1a07e5a4a46a4d1c8addc6d37c269357
genre Planktonic foraminifera
genre_facet Planktonic foraminifera
op_source Climate of the Past, Vol 15, Pp 881-891 (2019)
op_relation https://www.clim-past.net/15/881/2019/cp-15-881-2019.pdf
https://doaj.org/toc/1814-9324
https://doaj.org/toc/1814-9332
doi:10.5194/cp-15-881-2019
1814-9324
1814-9332
https://doaj.org/article/1a07e5a4a46a4d1c8addc6d37c269357
op_doi https://doi.org/10.5194/cp-15-881-2019
container_title Climate of the Past
container_volume 15
container_issue 3
container_start_page 881
op_container_end_page 891
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