Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles
Methanopyrus spp. are usually isolated from harsh niches, such as high osmotic pressure and extreme temperature. However, the molecular mechanisms for their environmental adaption are poorly understood. Archaeal species is commonly considered as primitive organism. The evolutional placement of archa...
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ftdoajarticles:oai:doaj.org/article:19b57aabc1f94d39a9939627ef64b0ff 2023-05-15T16:49:56+02:00 Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles Zhiliang Yu Yunting Ma Weihong Zhong Juanping Qiu Jun Li 2017-07-01T00:00:00Z https://doi.org/10.3389/fmicb.2017.01278 https://doaj.org/article/19b57aabc1f94d39a9939627ef64b0ff EN eng Frontiers Media S.A. http://journal.frontiersin.org/article/10.3389/fmicb.2017.01278/full https://doaj.org/toc/1664-302X 1664-302X doi:10.3389/fmicb.2017.01278 https://doaj.org/article/19b57aabc1f94d39a9939627ef64b0ff Frontiers in Microbiology, Vol 8 (2017) Methanopyrus genomic architecture thermophilic adaption environmental advantage marine microbe Microbiology QR1-502 article 2017 ftdoajarticles https://doi.org/10.3389/fmicb.2017.01278 2022-12-31T06:11:23Z Methanopyrus spp. are usually isolated from harsh niches, such as high osmotic pressure and extreme temperature. However, the molecular mechanisms for their environmental adaption are poorly understood. Archaeal species is commonly considered as primitive organism. The evolutional placement of archaea is a fundamental and intriguing scientific question. We sequenced the genomes of Methanopyrus strains SNP6 and KOL6 isolated from the Atlantic and Iceland, respectively. Comparative genomic analysis revealed genetic diversity and instability implicated in niche adaption, including a number of transporter- and integrase/transposase-related genes. Pan-genome analysis also defined the gene pool of Methanopyrus spp., in addition of ~120-Kb genomic region of plasticity impacting cognate genomic architecture. We believe that Methanopyrus genomics could facilitate efficient investigation/recognition of archaeal phylogenetic diverse patterns, as well as improve understanding of biological roles and significance of these versatile microbes. Article in Journal/Newspaper Iceland Directory of Open Access Journals: DOAJ Articles Frontiers in Microbiology 8 |
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Directory of Open Access Journals: DOAJ Articles |
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ftdoajarticles |
language |
English |
topic |
Methanopyrus genomic architecture thermophilic adaption environmental advantage marine microbe Microbiology QR1-502 |
spellingShingle |
Methanopyrus genomic architecture thermophilic adaption environmental advantage marine microbe Microbiology QR1-502 Zhiliang Yu Yunting Ma Weihong Zhong Juanping Qiu Jun Li Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
topic_facet |
Methanopyrus genomic architecture thermophilic adaption environmental advantage marine microbe Microbiology QR1-502 |
description |
Methanopyrus spp. are usually isolated from harsh niches, such as high osmotic pressure and extreme temperature. However, the molecular mechanisms for their environmental adaption are poorly understood. Archaeal species is commonly considered as primitive organism. The evolutional placement of archaea is a fundamental and intriguing scientific question. We sequenced the genomes of Methanopyrus strains SNP6 and KOL6 isolated from the Atlantic and Iceland, respectively. Comparative genomic analysis revealed genetic diversity and instability implicated in niche adaption, including a number of transporter- and integrase/transposase-related genes. Pan-genome analysis also defined the gene pool of Methanopyrus spp., in addition of ~120-Kb genomic region of plasticity impacting cognate genomic architecture. We believe that Methanopyrus genomics could facilitate efficient investigation/recognition of archaeal phylogenetic diverse patterns, as well as improve understanding of biological roles and significance of these versatile microbes. |
format |
Article in Journal/Newspaper |
author |
Zhiliang Yu Yunting Ma Weihong Zhong Juanping Qiu Jun Li |
author_facet |
Zhiliang Yu Yunting Ma Weihong Zhong Juanping Qiu Jun Li |
author_sort |
Zhiliang Yu |
title |
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
title_short |
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
title_full |
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
title_fullStr |
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
title_full_unstemmed |
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
title_sort |
comparative genomics of methanopyrus sp. snp6 and kol6 revealing genomic regions of plasticity implicated in extremely thermophilic profiles |
publisher |
Frontiers Media S.A. |
publishDate |
2017 |
url |
https://doi.org/10.3389/fmicb.2017.01278 https://doaj.org/article/19b57aabc1f94d39a9939627ef64b0ff |
genre |
Iceland |
genre_facet |
Iceland |
op_source |
Frontiers in Microbiology, Vol 8 (2017) |
op_relation |
http://journal.frontiersin.org/article/10.3389/fmicb.2017.01278/full https://doaj.org/toc/1664-302X 1664-302X doi:10.3389/fmicb.2017.01278 https://doaj.org/article/19b57aabc1f94d39a9939627ef64b0ff |
op_doi |
https://doi.org/10.3389/fmicb.2017.01278 |
container_title |
Frontiers in Microbiology |
container_volume |
8 |
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1766040104754741248 |