Functional immune diversity in reindeer reveals a high Arctic population at risk
Climate changes the geographic range of both species as well as pathogens, causing a potential increase in the vulnerability of populations or species with limited genetic diversity. With advances in high throughput sequencing (HTS) technologies, we can now define functional expressed genetic divers...
Published in: | Frontiers in Ecology and Evolution |
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ftdoajarticles:oai:doaj.org/article:0f47a0f7304b4148bad075633183c297 2023-05-15T15:08:54+02:00 Functional immune diversity in reindeer reveals a high Arctic population at risk Morten Lukacs Ingebjørg H. Nymo Knut Madslien Jørn Våge Vebjørn Veiberg Christer Moe Rolandsen Cathrine Arnason Bøe Arvind Y. M. Sundaram Unni Grimholt 2023-01-01T00:00:00Z https://doi.org/10.3389/fevo.2022.1058674 https://doaj.org/article/0f47a0f7304b4148bad075633183c297 EN eng Frontiers Media S.A. https://www.frontiersin.org/articles/10.3389/fevo.2022.1058674/full https://doaj.org/toc/2296-701X 2296-701X doi:10.3389/fevo.2022.1058674 https://doaj.org/article/0f47a0f7304b4148bad075633183c297 Frontiers in Ecology and Evolution, Vol 10 (2023) climate change MHC reindeer immune diversity Svalbard Norway Evolution QH359-425 Ecology QH540-549.5 article 2023 ftdoajarticles https://doi.org/10.3389/fevo.2022.1058674 2023-01-15T01:26:59Z Climate changes the geographic range of both species as well as pathogens, causing a potential increase in the vulnerability of populations or species with limited genetic diversity. With advances in high throughput sequencing (HTS) technologies, we can now define functional expressed genetic diversity of wild species at a larger scale and identify populations at risk. Previous studies have used genomic DNA to define major histocompatibility complex (MHC) class II diversity in reindeer. Varying numbers of expressed genes found in many ungulates strongly argues for using cDNA in MHC typing strategies to ensure that diversity estimates relate to functional genes. We have used available reindeer genomes to identify candidate genes and established an HTS approach to define expressed MHC class I and class II diversity. To capture a broad diversity we included samples from wild reindeer from Southern Norway, semi-domesticated reindeer from Northern Norway and reindeer from the high Artic archipelago Svalbard. Our data show a medium MHC diversity in semi-domesticated and wild Norwegian mainland reindeer, and low MHC diversity reindeer in Svalbard reindeer. The low immune diversity in Svalbard reindeer provides a potential risk if the pathogenic pressure changes in response to altered environmental conditions due to climate change, or increased human-related activity. Article in Journal/Newspaper Arctic Arctic Population Climate change Northern Norway Svalbard svalbard reindeer Directory of Open Access Journals: DOAJ Articles Arctic Svalbard Norway Frontiers in Ecology and Evolution 10 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
climate change MHC reindeer immune diversity Svalbard Norway Evolution QH359-425 Ecology QH540-549.5 |
spellingShingle |
climate change MHC reindeer immune diversity Svalbard Norway Evolution QH359-425 Ecology QH540-549.5 Morten Lukacs Ingebjørg H. Nymo Knut Madslien Jørn Våge Vebjørn Veiberg Christer Moe Rolandsen Cathrine Arnason Bøe Arvind Y. M. Sundaram Unni Grimholt Functional immune diversity in reindeer reveals a high Arctic population at risk |
topic_facet |
climate change MHC reindeer immune diversity Svalbard Norway Evolution QH359-425 Ecology QH540-549.5 |
description |
Climate changes the geographic range of both species as well as pathogens, causing a potential increase in the vulnerability of populations or species with limited genetic diversity. With advances in high throughput sequencing (HTS) technologies, we can now define functional expressed genetic diversity of wild species at a larger scale and identify populations at risk. Previous studies have used genomic DNA to define major histocompatibility complex (MHC) class II diversity in reindeer. Varying numbers of expressed genes found in many ungulates strongly argues for using cDNA in MHC typing strategies to ensure that diversity estimates relate to functional genes. We have used available reindeer genomes to identify candidate genes and established an HTS approach to define expressed MHC class I and class II diversity. To capture a broad diversity we included samples from wild reindeer from Southern Norway, semi-domesticated reindeer from Northern Norway and reindeer from the high Artic archipelago Svalbard. Our data show a medium MHC diversity in semi-domesticated and wild Norwegian mainland reindeer, and low MHC diversity reindeer in Svalbard reindeer. The low immune diversity in Svalbard reindeer provides a potential risk if the pathogenic pressure changes in response to altered environmental conditions due to climate change, or increased human-related activity. |
format |
Article in Journal/Newspaper |
author |
Morten Lukacs Ingebjørg H. Nymo Knut Madslien Jørn Våge Vebjørn Veiberg Christer Moe Rolandsen Cathrine Arnason Bøe Arvind Y. M. Sundaram Unni Grimholt |
author_facet |
Morten Lukacs Ingebjørg H. Nymo Knut Madslien Jørn Våge Vebjørn Veiberg Christer Moe Rolandsen Cathrine Arnason Bøe Arvind Y. M. Sundaram Unni Grimholt |
author_sort |
Morten Lukacs |
title |
Functional immune diversity in reindeer reveals a high Arctic population at risk |
title_short |
Functional immune diversity in reindeer reveals a high Arctic population at risk |
title_full |
Functional immune diversity in reindeer reveals a high Arctic population at risk |
title_fullStr |
Functional immune diversity in reindeer reveals a high Arctic population at risk |
title_full_unstemmed |
Functional immune diversity in reindeer reveals a high Arctic population at risk |
title_sort |
functional immune diversity in reindeer reveals a high arctic population at risk |
publisher |
Frontiers Media S.A. |
publishDate |
2023 |
url |
https://doi.org/10.3389/fevo.2022.1058674 https://doaj.org/article/0f47a0f7304b4148bad075633183c297 |
geographic |
Arctic Svalbard Norway |
geographic_facet |
Arctic Svalbard Norway |
genre |
Arctic Arctic Population Climate change Northern Norway Svalbard svalbard reindeer |
genre_facet |
Arctic Arctic Population Climate change Northern Norway Svalbard svalbard reindeer |
op_source |
Frontiers in Ecology and Evolution, Vol 10 (2023) |
op_relation |
https://www.frontiersin.org/articles/10.3389/fevo.2022.1058674/full https://doaj.org/toc/2296-701X 2296-701X doi:10.3389/fevo.2022.1058674 https://doaj.org/article/0f47a0f7304b4148bad075633183c297 |
op_doi |
https://doi.org/10.3389/fevo.2022.1058674 |
container_title |
Frontiers in Ecology and Evolution |
container_volume |
10 |
_version_ |
1766340173477445632 |