The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research
Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database (IsoGenieDB; https://isogenie-db.asc.ohio-state.edu/), a de novo developed...
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ftdoajarticles:oai:doaj.org/article:0208dcb2094a436984d071aaa6e147f5 2024-01-07T09:41:46+01:00 The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research Benjamin Bolduc Suzanne B. Hodgkins Ruth K. Varner Patrick M. Crill Carmody K. McCalley Jeffrey P. Chanton Gene W. Tyson William J. Riley Michael Palace Melissa B. Duhaime Moira A. Hough IsoGenie Project Coordinators IsoGenie Project Team A2A Project Team Scott R. Saleska Matthew B. Sullivan Virginia I. Rich 2020-08-01T00:00:00Z https://doi.org/10.7717/peerj.9467 https://doaj.org/article/0208dcb2094a436984d071aaa6e147f5 EN eng PeerJ Inc. https://peerj.com/articles/9467.pdf https://peerj.com/articles/9467/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.9467 2167-8359 https://doaj.org/article/0208dcb2094a436984d071aaa6e147f5 PeerJ, Vol 8, p e9467 (2020) Graph database Data management Ecosystem science Interdisciplinary Information analysis Database Medicine R Biology (General) QH301-705.5 article 2020 ftdoajarticles https://doi.org/10.7717/peerj.9467 2023-12-10T01:51:05Z Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database (IsoGenieDB; https://isogenie-db.asc.ohio-state.edu/), a de novo developed data management and exploration platform, as a solution to this challenge of accurately representing and integrating heterogenous environmental and microbial data across ecosystem scales. The IsoGenieDB is a public and private data infrastructure designed to store and query data generated by the IsoGenie Project, a ~10 year DOE-funded project focused on discovering ecosystem climate feedbacks in a thawing permafrost landscape. The IsoGenieDB provides (i) a platform for IsoGenie Project members to explore the project’s interdisciplinary datasets across scales through the inherent relationships among data entities, (ii) a framework to consolidate and harmonize the datasets needed by the team’s modelers, and (iii) a public venue that leverages the same spatially explicit, disciplinarily integrated data structure to share published datasets. The IsoGenieDB is also being expanded to cover the NASA-funded Archaea to Atmosphere (A2A) project, which scales the findings of IsoGenie to a broader suite of Arctic peatlands, via the umbrella A2A Database (A2A-DB). The IsoGenieDB’s expandability and flexible architecture allow it to serve as an example ecosystems database. Article in Journal/Newspaper Arctic permafrost Directory of Open Access Journals: DOAJ Articles Arctic PeerJ 8 e9467 |
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Open Polar |
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Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Graph database Data management Ecosystem science Interdisciplinary Information analysis Database Medicine R Biology (General) QH301-705.5 |
spellingShingle |
Graph database Data management Ecosystem science Interdisciplinary Information analysis Database Medicine R Biology (General) QH301-705.5 Benjamin Bolduc Suzanne B. Hodgkins Ruth K. Varner Patrick M. Crill Carmody K. McCalley Jeffrey P. Chanton Gene W. Tyson William J. Riley Michael Palace Melissa B. Duhaime Moira A. Hough IsoGenie Project Coordinators IsoGenie Project Team A2A Project Team Scott R. Saleska Matthew B. Sullivan Virginia I. Rich The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
topic_facet |
Graph database Data management Ecosystem science Interdisciplinary Information analysis Database Medicine R Biology (General) QH301-705.5 |
description |
Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database (IsoGenieDB; https://isogenie-db.asc.ohio-state.edu/), a de novo developed data management and exploration platform, as a solution to this challenge of accurately representing and integrating heterogenous environmental and microbial data across ecosystem scales. The IsoGenieDB is a public and private data infrastructure designed to store and query data generated by the IsoGenie Project, a ~10 year DOE-funded project focused on discovering ecosystem climate feedbacks in a thawing permafrost landscape. The IsoGenieDB provides (i) a platform for IsoGenie Project members to explore the project’s interdisciplinary datasets across scales through the inherent relationships among data entities, (ii) a framework to consolidate and harmonize the datasets needed by the team’s modelers, and (iii) a public venue that leverages the same spatially explicit, disciplinarily integrated data structure to share published datasets. The IsoGenieDB is also being expanded to cover the NASA-funded Archaea to Atmosphere (A2A) project, which scales the findings of IsoGenie to a broader suite of Arctic peatlands, via the umbrella A2A Database (A2A-DB). The IsoGenieDB’s expandability and flexible architecture allow it to serve as an example ecosystems database. |
format |
Article in Journal/Newspaper |
author |
Benjamin Bolduc Suzanne B. Hodgkins Ruth K. Varner Patrick M. Crill Carmody K. McCalley Jeffrey P. Chanton Gene W. Tyson William J. Riley Michael Palace Melissa B. Duhaime Moira A. Hough IsoGenie Project Coordinators IsoGenie Project Team A2A Project Team Scott R. Saleska Matthew B. Sullivan Virginia I. Rich |
author_facet |
Benjamin Bolduc Suzanne B. Hodgkins Ruth K. Varner Patrick M. Crill Carmody K. McCalley Jeffrey P. Chanton Gene W. Tyson William J. Riley Michael Palace Melissa B. Duhaime Moira A. Hough IsoGenie Project Coordinators IsoGenie Project Team A2A Project Team Scott R. Saleska Matthew B. Sullivan Virginia I. Rich |
author_sort |
Benjamin Bolduc |
title |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_short |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_full |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_fullStr |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_full_unstemmed |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_sort |
isogenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
publisher |
PeerJ Inc. |
publishDate |
2020 |
url |
https://doi.org/10.7717/peerj.9467 https://doaj.org/article/0208dcb2094a436984d071aaa6e147f5 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic permafrost |
genre_facet |
Arctic permafrost |
op_source |
PeerJ, Vol 8, p e9467 (2020) |
op_relation |
https://peerj.com/articles/9467.pdf https://peerj.com/articles/9467/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.9467 2167-8359 https://doaj.org/article/0208dcb2094a436984d071aaa6e147f5 |
op_doi |
https://doi.org/10.7717/peerj.9467 |
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PeerJ |
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8 |
container_start_page |
e9467 |
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