FishSNP: a high quality cross-species SNP database of fishes ...
This file includes 45 million nonredundant SNP data for 13 fish species (Asian swamp eel (Monopterus albus), Atlantic salmon (Salmo salar), barramundi (Lates calcarifer), channel catfish (Ictalurus punctatus), common carp (Cyprinus carpio), grass carp (Ctenopharyngodon idella), large scale loach (Pa...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.c.6793827 https://springernature.figshare.com/collections/FishSNP_a_high_quality_cross-species_SNP_database_of_fishes/6793827 |
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ftdatacite:10.6084/m9.figshare.c.6793827 2024-04-28T08:13:33+00:00 FishSNP: a high quality cross-species SNP database of fishes ... Xia, Xiao-Qin 2024 https://dx.doi.org/10.6084/m9.figshare.c.6793827 https://springernature.figshare.com/collections/FishSNP_a_high_quality_cross-species_SNP_database_of_fishes/6793827 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Genetics FOS Biological sciences Genomics Bioinformatics FOS Computer and information sciences Collection article 2024 ftdatacite https://doi.org/10.6084/m9.figshare.c.6793827 2024-04-02T10:40:18Z This file includes 45 million nonredundant SNP data for 13 fish species (Asian swamp eel (Monopterus albus), Atlantic salmon (Salmo salar), barramundi (Lates calcarifer), channel catfish (Ictalurus punctatus), common carp (Cyprinus carpio), grass carp (Ctenopharyngodon idella), large scale loach (Paramisgurnus dabryanus), Nile tilapia (Oreochromis niloticus), rainbow trout (Oncorhynchus mykiss), rohu labeo (Labeo rohita), silver carp (Hypophthalmichthys molitrix), snakehead (Channa argus), yellow catfish (Tachysurus fulvidraco)), with 30 million of those being high-quality SNPs that passed population testing (the Mendelian segregation ratio test or Hardy-Weinberg equilibrium test). We clloected SNPs from articles and mapped them to different genome versions, this compressed files inclued 13 folders named fish species, and there are SNPs data, unmapping data and md5 check file in each folder. ... Article in Journal/Newspaper Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences Genomics Bioinformatics FOS Computer and information sciences |
spellingShingle |
Genetics FOS Biological sciences Genomics Bioinformatics FOS Computer and information sciences Xia, Xiao-Qin FishSNP: a high quality cross-species SNP database of fishes ... |
topic_facet |
Genetics FOS Biological sciences Genomics Bioinformatics FOS Computer and information sciences |
description |
This file includes 45 million nonredundant SNP data for 13 fish species (Asian swamp eel (Monopterus albus), Atlantic salmon (Salmo salar), barramundi (Lates calcarifer), channel catfish (Ictalurus punctatus), common carp (Cyprinus carpio), grass carp (Ctenopharyngodon idella), large scale loach (Paramisgurnus dabryanus), Nile tilapia (Oreochromis niloticus), rainbow trout (Oncorhynchus mykiss), rohu labeo (Labeo rohita), silver carp (Hypophthalmichthys molitrix), snakehead (Channa argus), yellow catfish (Tachysurus fulvidraco)), with 30 million of those being high-quality SNPs that passed population testing (the Mendelian segregation ratio test or Hardy-Weinberg equilibrium test). We clloected SNPs from articles and mapped them to different genome versions, this compressed files inclued 13 folders named fish species, and there are SNPs data, unmapping data and md5 check file in each folder. ... |
format |
Article in Journal/Newspaper |
author |
Xia, Xiao-Qin |
author_facet |
Xia, Xiao-Qin |
author_sort |
Xia, Xiao-Qin |
title |
FishSNP: a high quality cross-species SNP database of fishes ... |
title_short |
FishSNP: a high quality cross-species SNP database of fishes ... |
title_full |
FishSNP: a high quality cross-species SNP database of fishes ... |
title_fullStr |
FishSNP: a high quality cross-species SNP database of fishes ... |
title_full_unstemmed |
FishSNP: a high quality cross-species SNP database of fishes ... |
title_sort |
fishsnp: a high quality cross-species snp database of fishes ... |
publisher |
figshare |
publishDate |
2024 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.6793827 https://springernature.figshare.com/collections/FishSNP_a_high_quality_cross-species_SNP_database_of_fishes/6793827 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.c.6793827 |
_version_ |
1797580022082437120 |