Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ...
Abstract Background The Pacific oyster, Crassostrea gigas, is an economically important shellfish around the world. Great efforts have been made to improve its growth rate through genetic breeding. However, the candidate marker genes, pathways, and potential lncRNAs involved in oyster growth regulat...
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ftdatacite:10.6084/m9.figshare.c.6785329 2024-09-15T18:03:06+00:00 Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... Li, Yongjing Yang, Ben Shi, Chenyu Tan, Ying Ren, Liting Mokrani, Ahmed Li, Qi Liu, Shikai 2024 https://dx.doi.org/10.6084/m9.figshare.c.6785329 https://springernature.figshare.com/collections/Integrated_analysis_of_mRNAs_and_lncRNAs_reveals_candidate_marker_genes_and_potential_hub_lncRNAs_associated_with_growth_regulation_of_the_Pacific_Oyster_Crassostrea_gigas/6785329 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Genetics FOS: Biological sciences Collection article 2024 ftdatacite https://doi.org/10.6084/m9.figshare.c.6785329 2024-09-02T08:18:53Z Abstract Background The Pacific oyster, Crassostrea gigas, is an economically important shellfish around the world. Great efforts have been made to improve its growth rate through genetic breeding. However, the candidate marker genes, pathways, and potential lncRNAs involved in oyster growth regulation remain largely unknown. To identify genes, lncRNAs, and pathways involved in growth regulation, C. gigas spat was cultured at a low temperature (15 ℃) to yield a growth-inhibited model, which was used to conduct comparative transcriptome analysis with spat cultured at normal temperature (25 ℃). Results In total, 8627 differentially expressed genes (DEGs) and 1072 differentially expressed lncRNAs (DELs) were identified between the normal-growth oysters (cultured at 25 ℃, hereinafter referred to as NG) and slow-growth oysters (cultured at 15 ℃, hereinafter referred to as SG). Functional enrichment analysis showed that these DEGs were mostly enriched in the AMPK signaling pathway, MAPK signaling pathway, insulin ... Article in Journal/Newspaper Crassostrea gigas Pacific oyster DataCite |
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Genetics FOS: Biological sciences |
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Genetics FOS: Biological sciences Li, Yongjing Yang, Ben Shi, Chenyu Tan, Ying Ren, Liting Mokrani, Ahmed Li, Qi Liu, Shikai Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
topic_facet |
Genetics FOS: Biological sciences |
description |
Abstract Background The Pacific oyster, Crassostrea gigas, is an economically important shellfish around the world. Great efforts have been made to improve its growth rate through genetic breeding. However, the candidate marker genes, pathways, and potential lncRNAs involved in oyster growth regulation remain largely unknown. To identify genes, lncRNAs, and pathways involved in growth regulation, C. gigas spat was cultured at a low temperature (15 ℃) to yield a growth-inhibited model, which was used to conduct comparative transcriptome analysis with spat cultured at normal temperature (25 ℃). Results In total, 8627 differentially expressed genes (DEGs) and 1072 differentially expressed lncRNAs (DELs) were identified between the normal-growth oysters (cultured at 25 ℃, hereinafter referred to as NG) and slow-growth oysters (cultured at 15 ℃, hereinafter referred to as SG). Functional enrichment analysis showed that these DEGs were mostly enriched in the AMPK signaling pathway, MAPK signaling pathway, insulin ... |
format |
Article in Journal/Newspaper |
author |
Li, Yongjing Yang, Ben Shi, Chenyu Tan, Ying Ren, Liting Mokrani, Ahmed Li, Qi Liu, Shikai |
author_facet |
Li, Yongjing Yang, Ben Shi, Chenyu Tan, Ying Ren, Liting Mokrani, Ahmed Li, Qi Liu, Shikai |
author_sort |
Li, Yongjing |
title |
Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
title_short |
Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
title_full |
Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
title_fullStr |
Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
title_full_unstemmed |
Integrated analysis of mRNAs and lncRNAs reveals candidate marker genes and potential hub lncRNAs associated with growth regulation of the Pacific Oyster, Crassostrea gigas ... |
title_sort |
integrated analysis of mrnas and lncrnas reveals candidate marker genes and potential hub lncrnas associated with growth regulation of the pacific oyster, crassostrea gigas ... |
publisher |
figshare |
publishDate |
2024 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.6785329 https://springernature.figshare.com/collections/Integrated_analysis_of_mRNAs_and_lncRNAs_reveals_candidate_marker_genes_and_potential_hub_lncRNAs_associated_with_growth_regulation_of_the_Pacific_Oyster_Crassostrea_gigas/6785329 |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.c.6785329 |
_version_ |
1810440617912696832 |