Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region
Abstract Background The importance of the gut microbiota for health and wellbeing is well established for humans and some land animals. The gut microbiota is supposedly as important for fish, but existing knowledge has many gaps, in particular for fish in the Arctic areas. This study addressed the d...
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ftdatacite:10.6084/m9.figshare.c.5285847 2023-05-15T14:59:44+02:00 Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild 2021 https://dx.doi.org/10.6084/m9.figshare.c.5285847 https://springernature.figshare.com/collections/Microbiota_in_intestinal_digesta_of_Atlantic_salmon_Salmo_salar_observed_from_late_freshwater_stage_until_one_year_in_seawater_and_effects_of_functional_ingredients_a_case_study_from_a_commercial_sized_research_site_in_the_Arctic_region/5285847 unknown figshare https://dx.doi.org/10.1186/s42523-021-00075-7 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Collection article 2021 ftdatacite https://doi.org/10.6084/m9.figshare.c.5285847 https://doi.org/10.1186/s42523-021-00075-7 2021-11-05T12:55:41Z Abstract Background The importance of the gut microbiota for health and wellbeing is well established for humans and some land animals. The gut microbiota is supposedly as important for fish, but existing knowledge has many gaps, in particular for fish in the Arctic areas. This study addressed the dynamics of Atlantic salmon digesta-associated gut microbiota assemblage and its associations with host responses from freshwater to seawater life stages under large-scale, commercial conditions in the Arctic region of Norway, and explored the effects of functional ingredients. The microbiota was characterized by 16S rRNA gene sequencing in distal intestinal digesta at four time points: 2 weeks before seawater transfer (in May, FW); 4 weeks after seawater transfer (in June, SW1); in November (SW2), and in April (SW3) the following year. Two series of diets were fed, varying throughout the observation time in nutrient composition according to the requirements of fish, one without (Ref diet), and the other with functional ingredients (Test diet). The functional ingredients, i.e. nucleotides, yeast cell walls, one prebiotic and essential fatty acids, were supplemented as single or mixtures based on the strategies from the feed company. Results Overall, the fish showed higher microbial richness and lactic acid bacteria (LAB) abundance after seawater transfer, while Simpson’s diversity decreased throughout the observation period. At SW1, the gut microbiota was slightly different from those at FW, and was dominated by the genera Lactobacillus and Photobacterium. As the fish progressed towards SW2 and SW3, the genera Lactobacillus and Mycoplasma became more prominent, with a corresponding decline in genus Photobacterium. The overall bacterial profiles at these time points showed a clear distinction from those at FW. A significant effect of functional ingredients (a mixture of nucleotides, yeast cell walls and essential fatty acids) was observed at SW2, where Test-fed fish showed lower microbial richness, Shannon’s diversity, and LAB abundance. The multivariate association analysis identified differentially abundant taxa, especially Megasphaera, to be significantly associated with gut immune and barrier gene expressions, and plasma nutrients. Conclusions The gut microbiota profile varied during the observation period, and the Mycoplasma became the dominating bacteria with time. Megasphaera abundance was associated with gut health and plasma nutrient biomarkers. Functional ingredients modulated the gut microbiota profile during an important ongrowing stage. Article in Journal/Newspaper Arctic Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) Arctic Norway |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences |
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Microbiology FOS Biological sciences Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
topic_facet |
Microbiology FOS Biological sciences |
description |
Abstract Background The importance of the gut microbiota for health and wellbeing is well established for humans and some land animals. The gut microbiota is supposedly as important for fish, but existing knowledge has many gaps, in particular for fish in the Arctic areas. This study addressed the dynamics of Atlantic salmon digesta-associated gut microbiota assemblage and its associations with host responses from freshwater to seawater life stages under large-scale, commercial conditions in the Arctic region of Norway, and explored the effects of functional ingredients. The microbiota was characterized by 16S rRNA gene sequencing in distal intestinal digesta at four time points: 2 weeks before seawater transfer (in May, FW); 4 weeks after seawater transfer (in June, SW1); in November (SW2), and in April (SW3) the following year. Two series of diets were fed, varying throughout the observation time in nutrient composition according to the requirements of fish, one without (Ref diet), and the other with functional ingredients (Test diet). The functional ingredients, i.e. nucleotides, yeast cell walls, one prebiotic and essential fatty acids, were supplemented as single or mixtures based on the strategies from the feed company. Results Overall, the fish showed higher microbial richness and lactic acid bacteria (LAB) abundance after seawater transfer, while Simpson’s diversity decreased throughout the observation period. At SW1, the gut microbiota was slightly different from those at FW, and was dominated by the genera Lactobacillus and Photobacterium. As the fish progressed towards SW2 and SW3, the genera Lactobacillus and Mycoplasma became more prominent, with a corresponding decline in genus Photobacterium. The overall bacterial profiles at these time points showed a clear distinction from those at FW. A significant effect of functional ingredients (a mixture of nucleotides, yeast cell walls and essential fatty acids) was observed at SW2, where Test-fed fish showed lower microbial richness, Shannon’s diversity, and LAB abundance. The multivariate association analysis identified differentially abundant taxa, especially Megasphaera, to be significantly associated with gut immune and barrier gene expressions, and plasma nutrients. Conclusions The gut microbiota profile varied during the observation period, and the Mycoplasma became the dominating bacteria with time. Megasphaera abundance was associated with gut health and plasma nutrient biomarkers. Functional ingredients modulated the gut microbiota profile during an important ongrowing stage. |
format |
Article in Journal/Newspaper |
author |
Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild |
author_facet |
Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild |
author_sort |
Wang, Jie |
title |
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_short |
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_full |
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_fullStr |
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_full_unstemmed |
Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_sort |
microbiota in intestinal digesta of atlantic salmon (salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the arctic region |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.5285847 https://springernature.figshare.com/collections/Microbiota_in_intestinal_digesta_of_Atlantic_salmon_Salmo_salar_observed_from_late_freshwater_stage_until_one_year_in_seawater_and_effects_of_functional_ingredients_a_case_study_from_a_commercial_sized_research_site_in_the_Arctic_region/5285847 |
geographic |
Arctic Norway |
geographic_facet |
Arctic Norway |
genre |
Arctic Atlantic salmon Salmo salar |
genre_facet |
Arctic Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.1186/s42523-021-00075-7 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.5285847 https://doi.org/10.1186/s42523-021-00075-7 |
_version_ |
1766331862515449856 |