Complete genome analysis of a virulent Vibrio scophthalmi strain VSc190401 isolated from diseased marine fish half-smooth tongue sole, Cynoglossus semilaevis ...

• Main Authors: Zhang, Zheng, Yu, Yong-xiang, Wang, Yin-geng, Liu, Xiao, Wang, Li-fang, Zhang, Hao, Liao, Mei-jie, Li, Bin
• Format: Article in Journal/Newspaper
• Language: unknown
• Published: figshare 2020
• Subjects: Genetics; FOS Biological sciences; Turbot
• Online Access: https://dx.doi.org/10.6084/m9.figshare.c.5204653; https://springernature.figshare.com/collections/Complete_genome_analysis_of_a_virulent_Vibrio_scophthalmi_strain_VSc190401_isolated_from_diseased_marine_fish_half-smooth_tongue_sole_Cynoglossus_semilaevis/5204653

Abstract Background Vibrio scophthalmi is an opportunistic bacterial pathogen, which is widely distributed in the marine environment. Earlier studies have suggested that it is a normal microorganism in the turbot gut. However, recent studies have confirmed that this bacterial strain can cause diseases in many different marine animals. Therefore, it is necessary to investigate its whole genome for better understanding its physiological and pathogenic mechanisms. Results In the present study, we obtained a pathogenic strain of V. scophthalmi from diseased half-smooth tongue sole (Cynoglossus semilaevis) and sequenced its whole genome. Its genome contained two circular chromosomes and two plasmids with a total size of 3,541,838 bp, which harbored 3185 coding genes. Among these genes, 2648, 2298, and 1915 genes could be found through annotation information in COG, Blast2GO, and KEGG databases, respectively. Moreover, 10 genomic islands were predicted to exist in the chromosome I through IslandViewer online ...