Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes
The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarch...
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ftdatacite:10.6084/m9.figshare.c.5127704 2023-05-15T14:46:37+02:00 Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes Payton, Laura noirot, celine hoede, claire hueppe, lukas Last, Kim Wilcockson, David ershova, elizaveta valiere, sophie Meyer, Bettina 2020 https://dx.doi.org/10.6084/m9.figshare.c.5127704 https://figshare.com/collections/Daily_transcriptomes_of_the_copepod_Calanus_finmarchicus_during_the_summer_solstice_at_high_Arctic_latitudes/5127704 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60806 Animal Physiological Ecology FOS Biological sciences 60102 Bioinformatics FOS Computer and information sciences Collection article 2020 ftdatacite https://doi.org/10.6084/m9.figshare.c.5127704 2021-11-05T12:55:41Z The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarchicus to higher latitudes with currently unknown impacts on its endogenous timing. Here we generated a daily transcriptome of C. finmarchicus at two high Arctic stations, during the more extreme time of Midnight Sun, the summer solstice. While the southern station (74.5 °N) was sea ice-free, the northern one (82.5 °N) was sea ice-covered. The mRNAs of the 42 samples have been sequenced with an average of 126 ± 5 million reads (mean ± SE) per sample, and aligned to the reference transcriptome. We detail the quality assessment of the datasets and the complete annotation procedure, providing the possibility to investigate daily gene expression of this ecologically important species at high Arctic latitudes, and to compare gene expression according to latitude and sea ice-coverage. Article in Journal/Newspaper Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun DataCite Metadata Store (German National Library of Science and Technology) Arctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60806 Animal Physiological Ecology FOS Biological sciences 60102 Bioinformatics FOS Computer and information sciences |
spellingShingle |
60806 Animal Physiological Ecology FOS Biological sciences 60102 Bioinformatics FOS Computer and information sciences Payton, Laura noirot, celine hoede, claire hueppe, lukas Last, Kim Wilcockson, David ershova, elizaveta valiere, sophie Meyer, Bettina Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
topic_facet |
60806 Animal Physiological Ecology FOS Biological sciences 60102 Bioinformatics FOS Computer and information sciences |
description |
The zooplankter Calanus finmarchicus is a member of the so-called “Calanus Complex”, a group of copepods that constitutes a key element of the Arctic polar marine ecosystem, providing a crucial link between primary production and higher trophic levels. Climate change induces the shift of C. finmarchicus to higher latitudes with currently unknown impacts on its endogenous timing. Here we generated a daily transcriptome of C. finmarchicus at two high Arctic stations, during the more extreme time of Midnight Sun, the summer solstice. While the southern station (74.5 °N) was sea ice-free, the northern one (82.5 °N) was sea ice-covered. The mRNAs of the 42 samples have been sequenced with an average of 126 ± 5 million reads (mean ± SE) per sample, and aligned to the reference transcriptome. We detail the quality assessment of the datasets and the complete annotation procedure, providing the possibility to investigate daily gene expression of this ecologically important species at high Arctic latitudes, and to compare gene expression according to latitude and sea ice-coverage. |
format |
Article in Journal/Newspaper |
author |
Payton, Laura noirot, celine hoede, claire hueppe, lukas Last, Kim Wilcockson, David ershova, elizaveta valiere, sophie Meyer, Bettina |
author_facet |
Payton, Laura noirot, celine hoede, claire hueppe, lukas Last, Kim Wilcockson, David ershova, elizaveta valiere, sophie Meyer, Bettina |
author_sort |
Payton, Laura |
title |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_short |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_full |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_fullStr |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_full_unstemmed |
Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes |
title_sort |
daily transcriptomes of the copepod calanus finmarchicus during the summer solstice at high arctic latitudes |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.5127704 https://figshare.com/collections/Daily_transcriptomes_of_the_copepod_Calanus_finmarchicus_during_the_summer_solstice_at_high_Arctic_latitudes/5127704 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun |
genre_facet |
Arctic Calanus finmarchicus Climate change Sea ice Copepods midnight sun |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.5127704 |
_version_ |
1766317823008702464 |