Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds
Abstract Background Thousands of years of natural and artificial selection have resulted in indigenous cattle breeds that are well-adapted to the environmental challenges of their local habitat and thereby are considered as valuable genetic resources. Understanding the genetic background of such ada...
Main Authors: | , , , , , , , |
---|---|
Format: | Article in Journal/Newspaper |
Language: | unknown |
Published: |
figshare
2020
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.c.5113891 https://springernature.figshare.com/collections/Signatures_of_selection_reveal_candidate_genes_involved_in_economic_traits_and_cold_acclimation_in_five_Swedish_cattle_breeds/5113891 |
id |
ftdatacite:10.6084/m9.figshare.c.5113891 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.6084/m9.figshare.c.5113891 2023-05-15T18:28:22+02:00 Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds Ghoreishifar, Seyed Mohammad Eriksson, Susanne Johansson, Anna M. Khansefid, Majid Moghaddaszadeh-Ahrabi, Sima Parna, Nahid Pourya Davoudi Javanmard, Arash 2020 https://dx.doi.org/10.6084/m9.figshare.c.5113891 https://springernature.figshare.com/collections/Signatures_of_selection_reveal_candidate_genes_involved_in_economic_traits_and_cold_acclimation_in_five_Swedish_cattle_breeds/5113891 unknown figshare https://dx.doi.org/10.1186/s12711-020-00571-5 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Genetics FOS Biological sciences Collection article 2020 ftdatacite https://doi.org/10.6084/m9.figshare.c.5113891 https://doi.org/10.1186/s12711-020-00571-5 2021-11-05T12:55:41Z Abstract Background Thousands of years of natural and artificial selection have resulted in indigenous cattle breeds that are well-adapted to the environmental challenges of their local habitat and thereby are considered as valuable genetic resources. Understanding the genetic background of such adaptation processes can help us design effective breeding objectives to preserve local breeds and improve commercial cattle. To identify regions under putative selection, GGP HD 150 K single nucleotide polymorphism (SNP) arrays were used to genotype 106 individuals representing five Swedish breeds i.e. native to different regions and covering areas with a subarctic cold climate in the north and mountainous west, to those with a continental climate in the more densely populated south regions. Results Five statistics were incorporated within a framework, known as de-correlated composite of multiple signals (DCMS) to detect signatures of selection. The obtained p-values were adjusted for multiple testing (FDR Article in Journal/Newspaper Subarctic DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences |
spellingShingle |
Genetics FOS Biological sciences Ghoreishifar, Seyed Mohammad Eriksson, Susanne Johansson, Anna M. Khansefid, Majid Moghaddaszadeh-Ahrabi, Sima Parna, Nahid Pourya Davoudi Javanmard, Arash Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
topic_facet |
Genetics FOS Biological sciences |
description |
Abstract Background Thousands of years of natural and artificial selection have resulted in indigenous cattle breeds that are well-adapted to the environmental challenges of their local habitat and thereby are considered as valuable genetic resources. Understanding the genetic background of such adaptation processes can help us design effective breeding objectives to preserve local breeds and improve commercial cattle. To identify regions under putative selection, GGP HD 150 K single nucleotide polymorphism (SNP) arrays were used to genotype 106 individuals representing five Swedish breeds i.e. native to different regions and covering areas with a subarctic cold climate in the north and mountainous west, to those with a continental climate in the more densely populated south regions. Results Five statistics were incorporated within a framework, known as de-correlated composite of multiple signals (DCMS) to detect signatures of selection. The obtained p-values were adjusted for multiple testing (FDR |
format |
Article in Journal/Newspaper |
author |
Ghoreishifar, Seyed Mohammad Eriksson, Susanne Johansson, Anna M. Khansefid, Majid Moghaddaszadeh-Ahrabi, Sima Parna, Nahid Pourya Davoudi Javanmard, Arash |
author_facet |
Ghoreishifar, Seyed Mohammad Eriksson, Susanne Johansson, Anna M. Khansefid, Majid Moghaddaszadeh-Ahrabi, Sima Parna, Nahid Pourya Davoudi Javanmard, Arash |
author_sort |
Ghoreishifar, Seyed Mohammad |
title |
Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
title_short |
Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
title_full |
Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
title_fullStr |
Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
title_full_unstemmed |
Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds |
title_sort |
signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five swedish cattle breeds |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.5113891 https://springernature.figshare.com/collections/Signatures_of_selection_reveal_candidate_genes_involved_in_economic_traits_and_cold_acclimation_in_five_Swedish_cattle_breeds/5113891 |
genre |
Subarctic |
genre_facet |
Subarctic |
op_relation |
https://dx.doi.org/10.1186/s12711-020-00571-5 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.5113891 https://doi.org/10.1186/s12711-020-00571-5 |
_version_ |
1766210826651303936 |