Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes
Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and...
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ftdatacite:10.6084/m9.figshare.c.4886136.v1 2023-05-15T17:45:05+02:00 Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes Rochus, Christina Jonas, Elisabeth Johansson, Anna 2020 https://dx.doi.org/10.6084/m9.figshare.c.4886136.v1 https://springernature.figshare.com/collections/Population_structure_of_five_native_sheep_breeds_of_Sweden_estimated_with_high_density_SNP_genotypes/4886136/1 unknown figshare https://dx.doi.org/10.1186/s12863-020-0827-8 https://dx.doi.org/10.6084/m9.figshare.c.4886136 CC BY 4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Genetics FOS Biological sciences Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Science Policy Collection article 2020 ftdatacite https://doi.org/10.6084/m9.figshare.c.4886136.v1 https://doi.org/10.1186/s12863-020-0827-8 https://doi.org/10.6084/m9.figshare.c.4886136 2021-11-05T12:55:41Z Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and Klövsjö sheep are from the middle of Sweden; Gotland and Gute sheep from Gotland, an island in the Baltic Sea; and Fjällnäs sheep from northern Sweden. We studied population structure by: principal component analysis (PCA), cluster-based analysis of admixture, and an estimated population tree. Results The analyses of the five Swedish breeds revealed that these breeds are five distinct breeds, while Gute and Gotland are more closely related to each other as seen in all analyses. All breeds had long branch lengths in the population tree indicating they’ve been subjected to drift. We repeated our analyses using 39 K SNP and including 50 K SNP genotypes from other European and southwestern Asian breeds from the Sheep HapMap project and 600 K SNP genotypes from a dataset of French sheep. Results arranged breeds into five groups: south-west Asia, south-west Europe, central Europe, north Europe and north European short-tailed sheep. Within this last group, Norwegian and Icelandic breeds, Finn and Romanov sheep, Scottish breeds, and Gute and Gotland sheep were more closely related while the remaining Swedish breeds and Ouessant sheep were distinct from all breeds and had longer branches in the population tree. Conclusions We showed population structure of five Swedish breeds and their structure within European and southwestern Asian breeds. Swedish breeds are unique, distinct breeds that have been subjected to drift but group with other north European short-tailed sheep. Article in Journal/Newspaper Northern Sweden DataCite Metadata Store (German National Library of Science and Technology) Finn ENVELOPE(12.739,12.739,65.935,65.935) Fjällnäs ENVELOPE(17.731,17.731,65.641,65.641) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Science Policy |
spellingShingle |
Genetics FOS Biological sciences Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Science Policy Rochus, Christina Jonas, Elisabeth Johansson, Anna Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
topic_facet |
Genetics FOS Biological sciences Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Science Policy |
description |
Abstract Background Native Swedish sheep breeds are part of the North European short-tailed sheep group; characterized in part by their genetic uniqueness. Our objective was to study the population structure of native Swedish sheep. Five breeds were genotyped using the 600 K SNP array. Dalapäls and Klövsjö sheep are from the middle of Sweden; Gotland and Gute sheep from Gotland, an island in the Baltic Sea; and Fjällnäs sheep from northern Sweden. We studied population structure by: principal component analysis (PCA), cluster-based analysis of admixture, and an estimated population tree. Results The analyses of the five Swedish breeds revealed that these breeds are five distinct breeds, while Gute and Gotland are more closely related to each other as seen in all analyses. All breeds had long branch lengths in the population tree indicating they’ve been subjected to drift. We repeated our analyses using 39 K SNP and including 50 K SNP genotypes from other European and southwestern Asian breeds from the Sheep HapMap project and 600 K SNP genotypes from a dataset of French sheep. Results arranged breeds into five groups: south-west Asia, south-west Europe, central Europe, north Europe and north European short-tailed sheep. Within this last group, Norwegian and Icelandic breeds, Finn and Romanov sheep, Scottish breeds, and Gute and Gotland sheep were more closely related while the remaining Swedish breeds and Ouessant sheep were distinct from all breeds and had longer branches in the population tree. Conclusions We showed population structure of five Swedish breeds and their structure within European and southwestern Asian breeds. Swedish breeds are unique, distinct breeds that have been subjected to drift but group with other north European short-tailed sheep. |
format |
Article in Journal/Newspaper |
author |
Rochus, Christina Jonas, Elisabeth Johansson, Anna |
author_facet |
Rochus, Christina Jonas, Elisabeth Johansson, Anna |
author_sort |
Rochus, Christina |
title |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_short |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_full |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_fullStr |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_full_unstemmed |
Population structure of five native sheep breeds of Sweden estimated with high density SNP genotypes |
title_sort |
population structure of five native sheep breeds of sweden estimated with high density snp genotypes |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.4886136.v1 https://springernature.figshare.com/collections/Population_structure_of_five_native_sheep_breeds_of_Sweden_estimated_with_high_density_SNP_genotypes/4886136/1 |
long_lat |
ENVELOPE(12.739,12.739,65.935,65.935) ENVELOPE(17.731,17.731,65.641,65.641) |
geographic |
Finn Fjällnäs |
geographic_facet |
Finn Fjällnäs |
genre |
Northern Sweden |
genre_facet |
Northern Sweden |
op_relation |
https://dx.doi.org/10.1186/s12863-020-0827-8 https://dx.doi.org/10.6084/m9.figshare.c.4886136 |
op_rights |
CC BY 4.0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.4886136.v1 https://doi.org/10.1186/s12863-020-0827-8 https://doi.org/10.6084/m9.figshare.c.4886136 |
_version_ |
1766147830375776256 |