Patterns of homozygosity in insular and continental goat breeds
Abstract Background Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and Africa...
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ftdatacite:10.6084/m9.figshare.c.4305845 2023-05-15T16:49:17+02:00 Patterns of homozygosity in insular and continental goat breeds Cardoso, Taina Amills, Marcel Bertolini, Francesca Rothschild, Max Marras, Gabriele Boink, Geert Jordana, Jordi Capote, Juan Carolan, Sean JĂłn Hallsson Kantanen, Juha Agueda Pons Lenstra, Johannes 2018 https://dx.doi.org/10.6084/m9.figshare.c.4305845 https://figshare.com/collections/Patterns_of_homozygosity_in_insular_and_continental_goat_breeds/4305845 unknown Figshare https://dx.doi.org/10.1186/s12711-018-0425-7 CC BY 4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Genetics FOS Biological sciences Biotechnology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Science Policy Collection article 2018 ftdatacite https://doi.org/10.6084/m9.figshare.c.4305845 https://doi.org/10.1186/s12711-018-0425-7 2021-11-05T12:55:41Z Abstract Background Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds. Results Among the breeds analysed, number and total length of ROH varied considerably and depending on breeds, ROH could cover a substantial fraction of the genome (up to 1.6Â Gb in Icelandic goats). When compared with their continental counterparts, goats from Iceland, Madagascar, La Palma and Ireland (Bilberry and Arran) displayed a significant increase in ROH coverage, ROH number and FROH values (P value Article in Journal/Newspaper Iceland DataCite Metadata Store (German National Library of Science and Technology) |
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DataCite Metadata Store (German National Library of Science and Technology) |
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Genetics FOS Biological sciences Biotechnology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Science Policy |
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Genetics FOS Biological sciences Biotechnology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Science Policy Cardoso, Taina Amills, Marcel Bertolini, Francesca Rothschild, Max Marras, Gabriele Boink, Geert Jordana, Jordi Capote, Juan Carolan, Sean JĂłn Hallsson Kantanen, Juha Agueda Pons Lenstra, Johannes Patterns of homozygosity in insular and continental goat breeds |
topic_facet |
Genetics FOS Biological sciences Biotechnology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Science Policy |
description |
Abstract Background Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds. Results Among the breeds analysed, number and total length of ROH varied considerably and depending on breeds, ROH could cover a substantial fraction of the genome (up to 1.6Â Gb in Icelandic goats). When compared with their continental counterparts, goats from Iceland, Madagascar, La Palma and Ireland (Bilberry and Arran) displayed a significant increase in ROH coverage, ROH number and FROH values (P value |
format |
Article in Journal/Newspaper |
author |
Cardoso, Taina Amills, Marcel Bertolini, Francesca Rothschild, Max Marras, Gabriele Boink, Geert Jordana, Jordi Capote, Juan Carolan, Sean JĂłn Hallsson Kantanen, Juha Agueda Pons Lenstra, Johannes |
author_facet |
Cardoso, Taina Amills, Marcel Bertolini, Francesca Rothschild, Max Marras, Gabriele Boink, Geert Jordana, Jordi Capote, Juan Carolan, Sean JĂłn Hallsson Kantanen, Juha Agueda Pons Lenstra, Johannes |
author_sort |
Cardoso, Taina |
title |
Patterns of homozygosity in insular and continental goat breeds |
title_short |
Patterns of homozygosity in insular and continental goat breeds |
title_full |
Patterns of homozygosity in insular and continental goat breeds |
title_fullStr |
Patterns of homozygosity in insular and continental goat breeds |
title_full_unstemmed |
Patterns of homozygosity in insular and continental goat breeds |
title_sort |
patterns of homozygosity in insular and continental goat breeds |
publisher |
Figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.4305845 https://figshare.com/collections/Patterns_of_homozygosity_in_insular_and_continental_goat_breeds/4305845 |
genre |
Iceland |
genre_facet |
Iceland |
op_relation |
https://dx.doi.org/10.1186/s12711-018-0425-7 |
op_rights |
CC BY 4.0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.4305845 https://doi.org/10.1186/s12711-018-0425-7 |
_version_ |
1766039436465799168 |