Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants
Abstract The Planococcus sp. PAMC21323 is a yellow pigment-producing bacterium isolated from King George Island in Antarctica; it has a broad growth temperature range of 5–40 °C. Herein, we describe the complete genome sequence information of the genus Planococcus with its annotated sequence, geneti...
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ftdatacite:10.6084/m9.figshare.c.4297139 2023-05-15T13:48:16+02:00 Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants Jung, Jong-Hyun Joe, Min-Ho Kim, Dong-Ho Park, Hyun Jong-Il Choi Sangyong Lim 2018 https://dx.doi.org/10.6084/m9.figshare.c.4297139 https://figshare.com/collections/Complete_genome_sequence_of_Planococcus_sp_PAMC21323_isolated_from_Antarctica_and_its_metabolic_potential_to_detoxify_pollutants/4297139 unknown Figshare https://dx.doi.org/10.1186/s40793-018-0334-y CC BY 4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Space Science Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences 39999 Chemical Sciences not elsewhere classified FOS Chemical sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Computational Biology Collection article 2018 ftdatacite https://doi.org/10.6084/m9.figshare.c.4297139 https://doi.org/10.1186/s40793-018-0334-y 2021-11-05T12:55:41Z Abstract The Planococcus sp. PAMC21323 is a yellow pigment-producing bacterium isolated from King George Island in Antarctica; it has a broad growth temperature range of 5–40 °C. Herein, we describe the complete genome sequence information of the genus Planococcus with its annotated sequence, genetic features for bioremediation, and oxidative stress capacity. The Planococcus sp. PAMC21323 possesses chromosomal DNA (3,196,500-bp) with plasmid DNA (3364-bp). The complete 3,199,864-bp of the genome consists of 3171 genes including 60 transfer RNAs and 24 ribosomal RNAs. Strain PAMC21323 encodes various genes associated with detoxification of heavy metal ions and aromatic hydrocarbons. Moreover, it is equipped with diverse stress response systems, which can be used to sense the internal and oxidative stresses caused by detoxification. This is the first report highlighting the genetic potential of Planococcus sp. PAMC21323 in bioremediation, suggesting application of this psychrotrophic strain in bioremediation in harsh environments. Article in Journal/Newspaper Antarc* Antarctica King George Island DataCite Metadata Store (German National Library of Science and Technology) King George Island |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Space Science Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences 39999 Chemical Sciences not elsewhere classified FOS Chemical sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Computational Biology |
spellingShingle |
Space Science Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences 39999 Chemical Sciences not elsewhere classified FOS Chemical sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Computational Biology Jung, Jong-Hyun Joe, Min-Ho Kim, Dong-Ho Park, Hyun Jong-Il Choi Sangyong Lim Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
topic_facet |
Space Science Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences 39999 Chemical Sciences not elsewhere classified FOS Chemical sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Computational Biology |
description |
Abstract The Planococcus sp. PAMC21323 is a yellow pigment-producing bacterium isolated from King George Island in Antarctica; it has a broad growth temperature range of 5–40 °C. Herein, we describe the complete genome sequence information of the genus Planococcus with its annotated sequence, genetic features for bioremediation, and oxidative stress capacity. The Planococcus sp. PAMC21323 possesses chromosomal DNA (3,196,500-bp) with plasmid DNA (3364-bp). The complete 3,199,864-bp of the genome consists of 3171 genes including 60 transfer RNAs and 24 ribosomal RNAs. Strain PAMC21323 encodes various genes associated with detoxification of heavy metal ions and aromatic hydrocarbons. Moreover, it is equipped with diverse stress response systems, which can be used to sense the internal and oxidative stresses caused by detoxification. This is the first report highlighting the genetic potential of Planococcus sp. PAMC21323 in bioremediation, suggesting application of this psychrotrophic strain in bioremediation in harsh environments. |
format |
Article in Journal/Newspaper |
author |
Jung, Jong-Hyun Joe, Min-Ho Kim, Dong-Ho Park, Hyun Jong-Il Choi Sangyong Lim |
author_facet |
Jung, Jong-Hyun Joe, Min-Ho Kim, Dong-Ho Park, Hyun Jong-Il Choi Sangyong Lim |
author_sort |
Jung, Jong-Hyun |
title |
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
title_short |
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
title_full |
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
title_fullStr |
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
title_full_unstemmed |
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants |
title_sort |
complete genome sequence of planococcus sp. pamc21323 isolated from antarctica and its metabolic potential to detoxify pollutants |
publisher |
Figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.4297139 https://figshare.com/collections/Complete_genome_sequence_of_Planococcus_sp_PAMC21323_isolated_from_Antarctica_and_its_metabolic_potential_to_detoxify_pollutants/4297139 |
geographic |
King George Island |
geographic_facet |
King George Island |
genre |
Antarc* Antarctica King George Island |
genre_facet |
Antarc* Antarctica King George Island |
op_relation |
https://dx.doi.org/10.1186/s40793-018-0334-y |
op_rights |
CC BY 4.0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.c.4297139 https://doi.org/10.1186/s40793-018-0334-y |
_version_ |
1766249057227898880 |