GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ...
Abstract Background Temperature adaptation of biological molecules is fundamental in evolutionary studies but remains unsolved. Fishes living in cold water are adapted to low temperatures through adaptive modification of their biological molecules, which enables their functioning in extreme cold. To...
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ftdatacite:10.6084/m9.figshare.c.4088288 2024-04-28T08:02:31+00:00 GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... Zhang, Dongsheng Hu, Peng Liu, Taigang Wang, Jian Jiang, Shouwen Xu, Qianghua Chen, Liangbiao 2018 https://dx.doi.org/10.6084/m9.figshare.c.4088288 https://springernature.figshare.com/collections/GC_bias_lead_to_increased_small_amino_acids_and_random_coils_of_proteins_in_cold-water_fishes/4088288 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Biophysics Biochemistry Physical Sciences not elsewhere classified Genetics FOS Biological sciences Molecular Biology Physiology Evolutionary Biology Environmental Sciences not elsewhere classified Chemical Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Marine Biology Inorganic Chemistry FOS Chemical sciences Collection article 2018 ftdatacite https://doi.org/10.6084/m9.figshare.c.4088288 2024-04-02T11:54:12Z Abstract Background Temperature adaptation of biological molecules is fundamental in evolutionary studies but remains unsolved. Fishes living in cold water are adapted to low temperatures through adaptive modification of their biological molecules, which enables their functioning in extreme cold. To study nucleotide and amino acid preference in cold-water fishes, we investigated the substitution asymmetry of codons and amino acids in protein-coding DNA sequences between cold-water fishes and tropical fishes., The former includes two Antarctic fishes, Dissostichus mawsoni (Antarctic toothfish), Gymnodraco acuticeps (Antarctic dragonfish), and two temperate fishes, Gadus morhua (Atlantic cod) and Gasterosteus aculeatus (stickleback), and the latter includes three tropical fishes, including Danio rerio (zebrafish), Oreochromis niloticus (Nile tilapia) and Xiphophorus maculatus (Platyfish). Results Cold-water fishes showed preference for Guanines and cytosines (GCs) in both synonymous and nonsynonymous codon ... Article in Journal/Newspaper Antarc* Antarctic Antarctic Toothfish atlantic cod Gadus morhua DataCite Metadata Store (German National Library of Science and Technology) |
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collection |
DataCite Metadata Store (German National Library of Science and Technology) |
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language |
unknown |
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Biophysics Biochemistry Physical Sciences not elsewhere classified Genetics FOS Biological sciences Molecular Biology Physiology Evolutionary Biology Environmental Sciences not elsewhere classified Chemical Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Marine Biology Inorganic Chemistry FOS Chemical sciences |
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Biophysics Biochemistry Physical Sciences not elsewhere classified Genetics FOS Biological sciences Molecular Biology Physiology Evolutionary Biology Environmental Sciences not elsewhere classified Chemical Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Marine Biology Inorganic Chemistry FOS Chemical sciences Zhang, Dongsheng Hu, Peng Liu, Taigang Wang, Jian Jiang, Shouwen Xu, Qianghua Chen, Liangbiao GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
topic_facet |
Biophysics Biochemistry Physical Sciences not elsewhere classified Genetics FOS Biological sciences Molecular Biology Physiology Evolutionary Biology Environmental Sciences not elsewhere classified Chemical Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Marine Biology Inorganic Chemistry FOS Chemical sciences |
description |
Abstract Background Temperature adaptation of biological molecules is fundamental in evolutionary studies but remains unsolved. Fishes living in cold water are adapted to low temperatures through adaptive modification of their biological molecules, which enables their functioning in extreme cold. To study nucleotide and amino acid preference in cold-water fishes, we investigated the substitution asymmetry of codons and amino acids in protein-coding DNA sequences between cold-water fishes and tropical fishes., The former includes two Antarctic fishes, Dissostichus mawsoni (Antarctic toothfish), Gymnodraco acuticeps (Antarctic dragonfish), and two temperate fishes, Gadus morhua (Atlantic cod) and Gasterosteus aculeatus (stickleback), and the latter includes three tropical fishes, including Danio rerio (zebrafish), Oreochromis niloticus (Nile tilapia) and Xiphophorus maculatus (Platyfish). Results Cold-water fishes showed preference for Guanines and cytosines (GCs) in both synonymous and nonsynonymous codon ... |
format |
Article in Journal/Newspaper |
author |
Zhang, Dongsheng Hu, Peng Liu, Taigang Wang, Jian Jiang, Shouwen Xu, Qianghua Chen, Liangbiao |
author_facet |
Zhang, Dongsheng Hu, Peng Liu, Taigang Wang, Jian Jiang, Shouwen Xu, Qianghua Chen, Liangbiao |
author_sort |
Zhang, Dongsheng |
title |
GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
title_short |
GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
title_full |
GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
title_fullStr |
GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
title_full_unstemmed |
GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
title_sort |
gc bias lead to increased small amino acids and random coils of proteins in cold-water fishes ... |
publisher |
figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.4088288 https://springernature.figshare.com/collections/GC_bias_lead_to_increased_small_amino_acids_and_random_coils_of_proteins_in_cold-water_fishes/4088288 |
genre |
Antarc* Antarctic Antarctic Toothfish atlantic cod Gadus morhua |
genre_facet |
Antarc* Antarctic Antarctic Toothfish atlantic cod Gadus morhua |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.c.4088288 |
_version_ |
1797573826906685440 |