Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis

Abstract Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Gen...

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Main Authors: Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Convey, Peter, Pearce, David, Taznim Mohidin, Yin, Wai-Fong, Chan, Kok
Format: Article in Journal/Newspaper
Language:unknown
Published: Figshare 2017
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3871957
https://springernature.figshare.com/collections/Complete_genome_of_Arthrobacter_alpinus_strain_R3_8_bioremediation_potential_unraveled_with_genomic_analysis/3871957
id ftdatacite:10.6084/m9.figshare.c.3871957
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.c.3871957 2023-05-15T13:03:52+02:00 Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis Wah-Seng See-Too Robson Ee Yan-Lue Lim Convey, Peter Pearce, David Taznim Mohidin Yin, Wai-Fong Chan, Kok 2017 https://dx.doi.org/10.6084/m9.figshare.c.3871957 https://springernature.figshare.com/collections/Complete_genome_of_Arthrobacter_alpinus_strain_R3_8_bioremediation_potential_unraveled_with_genomic_analysis/3871957 unknown Figshare https://dx.doi.org/10.1186/s40793-017-0264-0 CC BY 4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Biophysics Microbiology FOS Biological sciences Genetics Biotechnology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Hematology Infectious Diseases FOS Health sciences Virology Collection article 2017 ftdatacite https://doi.org/10.6084/m9.figshare.c.3871957 https://doi.org/10.1186/s40793-017-0264-0 2021-11-05T12:55:41Z Abstract Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes. Article in Journal/Newspaper Adelaide Island Antarc* Antarctic Antarctic Peninsula DataCite Metadata Store (German National Library of Science and Technology) Adelaide Island ENVELOPE(-68.914,-68.914,-67.762,-67.762) Antarctic Antarctic Peninsula Rothera ENVELOPE(-68.130,-68.130,-67.568,-67.568) Rothera Point ENVELOPE(-68.133,-68.133,-67.567,-67.567) The Antarctic
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Biophysics
Microbiology
FOS Biological sciences
Genetics
Biotechnology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Hematology
Infectious Diseases
FOS Health sciences
Virology
spellingShingle Biophysics
Microbiology
FOS Biological sciences
Genetics
Biotechnology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Hematology
Infectious Diseases
FOS Health sciences
Virology
Wah-Seng See-Too
Robson Ee
Yan-Lue Lim
Convey, Peter
Pearce, David
Taznim Mohidin
Yin, Wai-Fong
Chan, Kok
Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
topic_facet Biophysics
Microbiology
FOS Biological sciences
Genetics
Biotechnology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Hematology
Infectious Diseases
FOS Health sciences
Virology
description Abstract Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.
format Article in Journal/Newspaper
author Wah-Seng See-Too
Robson Ee
Yan-Lue Lim
Convey, Peter
Pearce, David
Taznim Mohidin
Yin, Wai-Fong
Chan, Kok
author_facet Wah-Seng See-Too
Robson Ee
Yan-Lue Lim
Convey, Peter
Pearce, David
Taznim Mohidin
Yin, Wai-Fong
Chan, Kok
author_sort Wah-Seng See-Too
title Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
title_short Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
title_full Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
title_fullStr Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
title_full_unstemmed Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis
title_sort complete genome of arthrobacter alpinus strain r3.8, bioremediation potential unraveled with genomic analysis
publisher Figshare
publishDate 2017
url https://dx.doi.org/10.6084/m9.figshare.c.3871957
https://springernature.figshare.com/collections/Complete_genome_of_Arthrobacter_alpinus_strain_R3_8_bioremediation_potential_unraveled_with_genomic_analysis/3871957
long_lat ENVELOPE(-68.914,-68.914,-67.762,-67.762)
ENVELOPE(-68.130,-68.130,-67.568,-67.568)
ENVELOPE(-68.133,-68.133,-67.567,-67.567)
geographic Adelaide Island
Antarctic
Antarctic Peninsula
Rothera
Rothera Point
The Antarctic
geographic_facet Adelaide Island
Antarctic
Antarctic Peninsula
Rothera
Rothera Point
The Antarctic
genre Adelaide Island
Antarc*
Antarctic
Antarctic Peninsula
genre_facet Adelaide Island
Antarc*
Antarctic
Antarctic Peninsula
op_relation https://dx.doi.org/10.1186/s40793-017-0264-0
op_rights CC BY 4.0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.c.3871957
https://doi.org/10.1186/s40793-017-0264-0
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