Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of th...
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ftdatacite:10.6084/m9.figshare.c.3831187_d1.v1 2023-05-15T13:38:53+02:00 Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics Adriaenssens, Evelien Kramer, Rolf Goethem, Marc Van Thulani Makhalanyane Hogg, Ian Cowan, Don 2017 https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Environmental_drivers_of_viral_community_composition_in_Antarctic_soils_identified_by_viromics/5224057/1 unknown Figshare https://dx.doi.org/10.1186/s40168-017-0301-7 https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1 CC BY + CC0 https://creativecommons.org/licenses/by/4.0 CC0 Medicine Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Plant Biology 60506 Virology Computational Biology Paper Text article-journal ScholarlyArticle 2017 ftdatacite https://doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://doi.org/10.1186/s40168-017-0301-7 https://doi.org/10.6084/m9.figshare.c.3831187_d1 2021-11-05T12:55:41Z Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of the assembled viromes. Diversity was assessed by MetaVir and abundant virus families defined as representing more than 1% of significant hits. All values are given as relative abundances in percent. Values for sample MGM, which needed to be split in two parts for upload to MetaVir, represent both parts (a and b; individual values for the separate parts are shown at the bottom). Sign. hits = significant reference database hits of the predicted genes at a maximum e value of 10â 5. Families belonging to the order Caudovirales are marked with an asterisk. Table S3. Environmental parameters measured for all soil samples. ex cat = exchangeable cations, variables designated with an asterisk were used in the RDA. Table S4. Microbial diversity in samples as determined by metagenomic sequencing, as percentage of the total reads assigned. Figure S1. Accumulation plots of the different taxa present in the 14 Antarctic virome read datasets. A) family level, B) genus level, C) species level. Report Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
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unknown |
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Medicine Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Plant Biology 60506 Virology Computational Biology |
spellingShingle |
Medicine Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Plant Biology 60506 Virology Computational Biology Adriaenssens, Evelien Kramer, Rolf Goethem, Marc Van Thulani Makhalanyane Hogg, Ian Cowan, Don Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
topic_facet |
Medicine Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Plant Biology 60506 Virology Computational Biology |
description |
Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of the assembled viromes. Diversity was assessed by MetaVir and abundant virus families defined as representing more than 1% of significant hits. All values are given as relative abundances in percent. Values for sample MGM, which needed to be split in two parts for upload to MetaVir, represent both parts (a and b; individual values for the separate parts are shown at the bottom). Sign. hits = significant reference database hits of the predicted genes at a maximum e value of 10â 5. Families belonging to the order Caudovirales are marked with an asterisk. Table S3. Environmental parameters measured for all soil samples. ex cat = exchangeable cations, variables designated with an asterisk were used in the RDA. Table S4. Microbial diversity in samples as determined by metagenomic sequencing, as percentage of the total reads assigned. Figure S1. Accumulation plots of the different taxa present in the 14 Antarctic virome read datasets. A) family level, B) genus level, C) species level. |
format |
Report |
author |
Adriaenssens, Evelien Kramer, Rolf Goethem, Marc Van Thulani Makhalanyane Hogg, Ian Cowan, Don |
author_facet |
Adriaenssens, Evelien Kramer, Rolf Goethem, Marc Van Thulani Makhalanyane Hogg, Ian Cowan, Don |
author_sort |
Adriaenssens, Evelien |
title |
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
title_short |
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
title_full |
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
title_fullStr |
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
title_full_unstemmed |
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics |
title_sort |
additional file 1: table s1. of environmental drivers of viral community composition in antarctic soils identified by viromics |
publisher |
Figshare |
publishDate |
2017 |
url |
https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Environmental_drivers_of_viral_community_composition_in_Antarctic_soils_identified_by_viromics/5224057/1 |
geographic |
Antarctic |
geographic_facet |
Antarctic |
genre |
Antarc* Antarctic |
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Antarc* Antarctic |
op_relation |
https://dx.doi.org/10.1186/s40168-017-0301-7 https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1 |
op_rights |
CC BY + CC0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://doi.org/10.1186/s40168-017-0301-7 https://doi.org/10.6084/m9.figshare.c.3831187_d1 |
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