Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics

Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of th...

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Main Authors: Adriaenssens, Evelien, Kramer, Rolf, Goethem, Marc Van, Thulani Makhalanyane, Hogg, Ian, Cowan, Don
Format: Report
Language:unknown
Published: Figshare 2017
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Environmental_drivers_of_viral_community_composition_in_Antarctic_soils_identified_by_viromics/5224057/1
id ftdatacite:10.6084/m9.figshare.c.3831187_d1.v1
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.c.3831187_d1.v1 2023-05-15T13:38:53+02:00 Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics Adriaenssens, Evelien Kramer, Rolf Goethem, Marc Van Thulani Makhalanyane Hogg, Ian Cowan, Don 2017 https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Environmental_drivers_of_viral_community_composition_in_Antarctic_soils_identified_by_viromics/5224057/1 unknown Figshare https://dx.doi.org/10.1186/s40168-017-0301-7 https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1 CC BY + CC0 https://creativecommons.org/licenses/by/4.0 CC0 Medicine Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Plant Biology 60506 Virology Computational Biology Paper Text article-journal ScholarlyArticle 2017 ftdatacite https://doi.org/10.6084/m9.figshare.c.3831187_d1.v1 https://doi.org/10.1186/s40168-017-0301-7 https://doi.org/10.6084/m9.figshare.c.3831187_d1 2021-11-05T12:55:41Z Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of the assembled viromes. Diversity was assessed by MetaVir and abundant virus families defined as representing more than 1% of significant hits. All values are given as relative abundances in percent. Values for sample MGM, which needed to be split in two parts for upload to MetaVir, represent both parts (a and b; individual values for the separate parts are shown at the bottom). Sign. hits = significant reference database hits of the predicted genes at a maximum e value of 10â 5. Families belonging to the order Caudovirales are marked with an asterisk. Table S3. Environmental parameters measured for all soil samples. ex cat = exchangeable cations, variables designated with an asterisk were used in the RDA. Table S4. Microbial diversity in samples as determined by metagenomic sequencing, as percentage of the total reads assigned. Figure S1. Accumulation plots of the different taxa present in the 14 Antarctic virome read datasets. A) family level, B) genus level, C) species level. Report Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Medicine
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Plant Biology
60506 Virology
Computational Biology
spellingShingle Medicine
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Plant Biology
60506 Virology
Computational Biology
Adriaenssens, Evelien
Kramer, Rolf
Goethem, Marc Van
Thulani Makhalanyane
Hogg, Ian
Cowan, Don
Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
topic_facet Medicine
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
Plant Biology
60506 Virology
Computational Biology
description Sample overview. Coordinates of sampling sites and sequencing metadata of viromes. Cleaned reads = reads after removal of contaminants; reads for assembly = reads considered by the assembly and mapping algorithm of CLC Genomics Workbench at the default parameters. Table S2. Taxonomic diversity of the assembled viromes. Diversity was assessed by MetaVir and abundant virus families defined as representing more than 1% of significant hits. All values are given as relative abundances in percent. Values for sample MGM, which needed to be split in two parts for upload to MetaVir, represent both parts (a and b; individual values for the separate parts are shown at the bottom). Sign. hits = significant reference database hits of the predicted genes at a maximum e value of 10â 5. Families belonging to the order Caudovirales are marked with an asterisk. Table S3. Environmental parameters measured for all soil samples. ex cat = exchangeable cations, variables designated with an asterisk were used in the RDA. Table S4. Microbial diversity in samples as determined by metagenomic sequencing, as percentage of the total reads assigned. Figure S1. Accumulation plots of the different taxa present in the 14 Antarctic virome read datasets. A) family level, B) genus level, C) species level.
format Report
author Adriaenssens, Evelien
Kramer, Rolf
Goethem, Marc Van
Thulani Makhalanyane
Hogg, Ian
Cowan, Don
author_facet Adriaenssens, Evelien
Kramer, Rolf
Goethem, Marc Van
Thulani Makhalanyane
Hogg, Ian
Cowan, Don
author_sort Adriaenssens, Evelien
title Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
title_short Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
title_full Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
title_fullStr Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
title_full_unstemmed Additional file 1: Table S1. of Environmental drivers of viral community composition in Antarctic soils identified by viromics
title_sort additional file 1: table s1. of environmental drivers of viral community composition in antarctic soils identified by viromics
publisher Figshare
publishDate 2017
url https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Environmental_drivers_of_viral_community_composition_in_Antarctic_soils_identified_by_viromics/5224057/1
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
genre_facet Antarc*
Antarctic
op_relation https://dx.doi.org/10.1186/s40168-017-0301-7
https://dx.doi.org/10.6084/m9.figshare.c.3831187_d1
op_rights CC BY + CC0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC0
op_doi https://doi.org/10.6084/m9.figshare.c.3831187_d1.v1
https://doi.org/10.1186/s40168-017-0301-7
https://doi.org/10.6084/m9.figshare.c.3831187_d1
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