Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

Primer sequences for 16S and six protein-coding genes of Bathymodiolus mussels’ symbionts. Table S2. Barcodes used for the amplification of (A) symbiont 16S rRNA encoding gene from 45 individual host mussels and (B) symbiont protein-coding genes from 72 individuals of host mussel. Table S3. Bacteria...

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Main Authors: Phuong-Thao Ho, Eunji Park, Hong, Soon, Kim, Eun-Hye, Kangchon Kim, Sook-Jin Jang, Vrijenhoek, Robert, Won, Yong-Jin
Format: Report
Language:unknown
Published: Figshare 2017
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3791164_d1.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Geographical_structure_of_endosymbiotic_bacteria_hosted_by_Bathymodiolus_mussels_at_eastern_Pacific_hydrothermal_vents/5053012/1
id ftdatacite:10.6084/m9.figshare.c.3791164_d1.v1
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spelling ftdatacite:10.6084/m9.figshare.c.3791164_d1.v1 2023-05-15T13:43:34+02:00 Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents Phuong-Thao Ho Eunji Park Hong, Soon Kim, Eun-Hye Kangchon Kim Sook-Jin Jang Vrijenhoek, Robert Won, Yong-Jin 2017 https://dx.doi.org/10.6084/m9.figshare.c.3791164_d1.v1 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Geographical_structure_of_endosymbiotic_bacteria_hosted_by_Bathymodiolus_mussels_at_eastern_Pacific_hydrothermal_vents/5053012/1 unknown Figshare https://dx.doi.org/10.1186/s12862-017-0966-3 https://dx.doi.org/10.6084/m9.figshare.c.3791164_d1 CC BY + CC0 https://creativecommons.org/licenses/by/4.0 CC0 Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology Immunology FOS Clinical medicine Marine Biology Cancer Inorganic Chemistry FOS Chemical sciences Plant Biology Paper Text article-journal ScholarlyArticle 2017 ftdatacite https://doi.org/10.6084/m9.figshare.c.3791164_d1.v1 https://doi.org/10.1186/s12862-017-0966-3 https://doi.org/10.6084/m9.figshare.c.3791164_d1 2021-11-05T12:55:41Z Primer sequences for 16S and six protein-coding genes of Bathymodiolus mussels’ symbionts. Table S2. Barcodes used for the amplification of (A) symbiont 16S rRNA encoding gene from 45 individual host mussels and (B) symbiont protein-coding genes from 72 individuals of host mussel. Table S3. Bacterial symbiont community in the gill tissues of host mussels, B. thermophilus and B. antarcticus, based on high-throughput data of 16S ribosomal RNA encoding gene from 45 individual host mussels. Table S4. Frequency distribution of Bathymodiolus symbiotic bacteria 16S phylotypes at seven vent localities. Table S5. Genetic diversity indices of symbiont 16S rRNA encoding gene from 45 individuals of host Bathymodiolus mussels in the EPR and PAR. Table S6. Summary table of synonymous and nonsynonymous substitutions of six protein-coding genes between two geographic groups, EPR + GAR and PAR. Table S7. Genetic diversity indices of symbiont protein-coding genes from 72 individuals of host Bathymodiolus mussels in the EPR, GAR, and PAR (based on 1% error correction criterion for the 454 pyrosequencing raw data). (DOCX 25 kb) Report Antarc* antarcticus DataCite Metadata Store (German National Library of Science and Technology) Pacific Gar’ ENVELOPE(162.014,162.014,57.140,57.140)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Immunology
FOS Clinical medicine
Marine Biology
Cancer
Inorganic Chemistry
FOS Chemical sciences
Plant Biology
spellingShingle Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Immunology
FOS Clinical medicine
Marine Biology
Cancer
Inorganic Chemistry
FOS Chemical sciences
Plant Biology
Phuong-Thao Ho
Eunji Park
Hong, Soon
Kim, Eun-Hye
Kangchon Kim
Sook-Jin Jang
Vrijenhoek, Robert
Won, Yong-Jin
Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
topic_facet Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Immunology
FOS Clinical medicine
Marine Biology
Cancer
Inorganic Chemistry
FOS Chemical sciences
Plant Biology
description Primer sequences for 16S and six protein-coding genes of Bathymodiolus mussels’ symbionts. Table S2. Barcodes used for the amplification of (A) symbiont 16S rRNA encoding gene from 45 individual host mussels and (B) symbiont protein-coding genes from 72 individuals of host mussel. Table S3. Bacterial symbiont community in the gill tissues of host mussels, B. thermophilus and B. antarcticus, based on high-throughput data of 16S ribosomal RNA encoding gene from 45 individual host mussels. Table S4. Frequency distribution of Bathymodiolus symbiotic bacteria 16S phylotypes at seven vent localities. Table S5. Genetic diversity indices of symbiont 16S rRNA encoding gene from 45 individuals of host Bathymodiolus mussels in the EPR and PAR. Table S6. Summary table of synonymous and nonsynonymous substitutions of six protein-coding genes between two geographic groups, EPR + GAR and PAR. Table S7. Genetic diversity indices of symbiont protein-coding genes from 72 individuals of host Bathymodiolus mussels in the EPR, GAR, and PAR (based on 1% error correction criterion for the 454 pyrosequencing raw data). (DOCX 25 kb)
format Report
author Phuong-Thao Ho
Eunji Park
Hong, Soon
Kim, Eun-Hye
Kangchon Kim
Sook-Jin Jang
Vrijenhoek, Robert
Won, Yong-Jin
author_facet Phuong-Thao Ho
Eunji Park
Hong, Soon
Kim, Eun-Hye
Kangchon Kim
Sook-Jin Jang
Vrijenhoek, Robert
Won, Yong-Jin
author_sort Phuong-Thao Ho
title Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
title_short Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
title_full Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
title_fullStr Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
title_full_unstemmed Additional file 1: Table S1. of Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
title_sort additional file 1: table s1. of geographical structure of endosymbiotic bacteria hosted by bathymodiolus mussels at eastern pacific hydrothermal vents
publisher Figshare
publishDate 2017
url https://dx.doi.org/10.6084/m9.figshare.c.3791164_d1.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_Table_S1_of_Geographical_structure_of_endosymbiotic_bacteria_hosted_by_Bathymodiolus_mussels_at_eastern_Pacific_hydrothermal_vents/5053012/1
long_lat ENVELOPE(162.014,162.014,57.140,57.140)
geographic Pacific
Gar’
geographic_facet Pacific
Gar’
genre Antarc*
antarcticus
genre_facet Antarc*
antarcticus
op_relation https://dx.doi.org/10.1186/s12862-017-0966-3
https://dx.doi.org/10.6084/m9.figshare.c.3791164_d1
op_rights CC BY + CC0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC0
op_doi https://doi.org/10.6084/m9.figshare.c.3791164_d1.v1
https://doi.org/10.1186/s12862-017-0966-3
https://doi.org/10.6084/m9.figshare.c.3791164_d1
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