Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles

Comparison of mitochondrial RNA editing sites between monilophytes and lycophytes. The experimentally confirmed editing sites in the genes atp1 and nad5 of the monilophyte species Polypodium cambricum, Dicksonia antarctica and Azolla filiculoides are compared with the respective editing sites deposi...

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Main Authors: Knie, Nils, Grewe, Felix, Fischer, Simon, Knoop, Volker
Format: Report
Language:unknown
Published: Figshare 2016
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3628889_d2
https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_Figure_S1_of_Reverse_U-to-C_editing_exceeds_C-to-U_RNA_editing_in_some_ferns_a_monilophyte-wide_comparison_of_chloroplast_and_mitochondrial_RNA_editing_suggests_independent_evolution_of_the_two_processes_in_both_organelles/4417301
id ftdatacite:10.6084/m9.figshare.c.3628889_d2
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spelling ftdatacite:10.6084/m9.figshare.c.3628889_d2 2023-05-15T13:31:05+02:00 Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles Knie, Nils Grewe, Felix Fischer, Simon Knoop, Volker 2016 https://dx.doi.org/10.6084/m9.figshare.c.3628889_d2 https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_Figure_S1_of_Reverse_U-to-C_editing_exceeds_C-to-U_RNA_editing_in_some_ferns_a_monilophyte-wide_comparison_of_chloroplast_and_mitochondrial_RNA_editing_suggests_independent_evolution_of_the_two_processes_in_both_organelles/4417301 unknown Figshare https://dx.doi.org/10.1186/s12862-016-0707-z CC BY + CC0 https://creativecommons.org/licenses/by/4.0 CC0 Biochemistry 29999 Physical Sciences not elsewhere classified FOS Physical sciences Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology Marine Biology 111714 Mental Health FOS Health sciences Hematology 110309 Infectious Diseases Plant Biology Paper Text article-journal ScholarlyArticle 2016 ftdatacite https://doi.org/10.6084/m9.figshare.c.3628889_d2 https://doi.org/10.1186/s12862-016-0707-z 2021-11-05T12:55:41Z Comparison of mitochondrial RNA editing sites between monilophytes and lycophytes. The experimentally confirmed editing sites in the genes atp1 and nad5 of the monilophyte species Polypodium cambricum, Dicksonia antarctica and Azolla filiculoides are compared with the respective editing sites deposited in NCBI from the lycophytes Isoetes engelmannii and Selaginella moellendorffii. Only 16 edits are shared between all five taxa. Most of the edits from the two lycophytes are unique to either one species or are shared between the two lycophytes and are therefore most likely independent gains. For the basal lycophyte Phlegmariurus squarrosus only 14 edits (all of the C-to-U type) are found in our cDNA analysis. Three of these edits are shared between all three lycophytes and six between Phlegmariurus and Isoetes. (DOCX 127 kb) Report Antarc* Antarctica DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Biochemistry
29999 Physical Sciences not elsewhere classified
FOS Physical sciences
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Marine Biology
111714 Mental Health
FOS Health sciences
Hematology
110309 Infectious Diseases
Plant Biology
spellingShingle Biochemistry
29999 Physical Sciences not elsewhere classified
FOS Physical sciences
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Marine Biology
111714 Mental Health
FOS Health sciences
Hematology
110309 Infectious Diseases
Plant Biology
Knie, Nils
Grewe, Felix
Fischer, Simon
Knoop, Volker
Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
topic_facet Biochemistry
29999 Physical Sciences not elsewhere classified
FOS Physical sciences
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Marine Biology
111714 Mental Health
FOS Health sciences
Hematology
110309 Infectious Diseases
Plant Biology
description Comparison of mitochondrial RNA editing sites between monilophytes and lycophytes. The experimentally confirmed editing sites in the genes atp1 and nad5 of the monilophyte species Polypodium cambricum, Dicksonia antarctica and Azolla filiculoides are compared with the respective editing sites deposited in NCBI from the lycophytes Isoetes engelmannii and Selaginella moellendorffii. Only 16 edits are shared between all five taxa. Most of the edits from the two lycophytes are unique to either one species or are shared between the two lycophytes and are therefore most likely independent gains. For the basal lycophyte Phlegmariurus squarrosus only 14 edits (all of the C-to-U type) are found in our cDNA analysis. Three of these edits are shared between all three lycophytes and six between Phlegmariurus and Isoetes. (DOCX 127 kb)
format Report
author Knie, Nils
Grewe, Felix
Fischer, Simon
Knoop, Volker
author_facet Knie, Nils
Grewe, Felix
Fischer, Simon
Knoop, Volker
author_sort Knie, Nils
title Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
title_short Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
title_full Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
title_fullStr Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
title_full_unstemmed Additional file 2: Figure S1. of Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
title_sort additional file 2: figure s1. of reverse u-to-c editing exceeds c-to-u rna editing in some ferns â a monilophyte-wide comparison of chloroplast and mitochondrial rna editing suggests independent evolution of the two processes in both organelles
publisher Figshare
publishDate 2016
url https://dx.doi.org/10.6084/m9.figshare.c.3628889_d2
https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_Figure_S1_of_Reverse_U-to-C_editing_exceeds_C-to-U_RNA_editing_in_some_ferns_a_monilophyte-wide_comparison_of_chloroplast_and_mitochondrial_RNA_editing_suggests_independent_evolution_of_the_two_processes_in_both_organelles/4417301
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation https://dx.doi.org/10.1186/s12862-016-0707-z
op_rights CC BY + CC0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC0
op_doi https://doi.org/10.6084/m9.figshare.c.3628889_d2
https://doi.org/10.1186/s12862-016-0707-z
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