Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost

Abstract The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5...

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Main Authors: Goordial, Jacqueline, Raymond-Bouchard, Isabelle, Ronholm, Jennifer, Shapiro, Nicole, Woyke, Tanja, Whyte, Lyle, Bakermans, Corien
Format: Article in Journal/Newspaper
Language:unknown
Published: Figshare 2015
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.c.3618833.v1
https://figshare.com/collections/Improved-high-quality_draft_genome_sequence_of_Rhodococcus_sp_JG-3_a_eurypsychrophilic_Actinobacteria_from_Antarctic_Dry_Valley_permafrost/3618833/1
id ftdatacite:10.6084/m9.figshare.c.3618833.v1
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spelling ftdatacite:10.6084/m9.figshare.c.3618833.v1 2023-05-15T13:58:34+02:00 Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien 2015 https://dx.doi.org/10.6084/m9.figshare.c.3618833.v1 https://figshare.com/collections/Improved-high-quality_draft_genome_sequence_of_Rhodococcus_sp_JG-3_a_eurypsychrophilic_Actinobacteria_from_Antarctic_Dry_Valley_permafrost/3618833/1 unknown Figshare https://dx.doi.org/10.1186/s40793-015-0043-8 https://dx.doi.org/10.6084/m9.figshare.c.3618833 CC BY 4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Medicine Microbiology FOS Biological sciences Genetics Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Computational Biology Collection article 2015 ftdatacite https://doi.org/10.6084/m9.figshare.c.3618833.v1 https://doi.org/10.1186/s40793-015-0043-8 https://doi.org/10.6084/m9.figshare.c.3618833 2021-11-05T12:55:41Z Abstract The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes. Article in Journal/Newspaper Antarc* Antarctic Antarctica permafrost DataCite Metadata Store (German National Library of Science and Technology) Antarctic
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Medicine
Microbiology
FOS Biological sciences
Genetics
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
110309 Infectious Diseases
FOS Health sciences
Computational Biology
spellingShingle Medicine
Microbiology
FOS Biological sciences
Genetics
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
110309 Infectious Diseases
FOS Health sciences
Computational Biology
Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
topic_facet Medicine
Microbiology
FOS Biological sciences
Genetics
Evolutionary Biology
Ecology
69999 Biological Sciences not elsewhere classified
110309 Infectious Diseases
FOS Health sciences
Computational Biology
description Abstract The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes.
format Article in Journal/Newspaper
author Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
author_facet Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
author_sort Goordial, Jacqueline
title Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_short Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_full Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_fullStr Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_full_unstemmed Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_sort improved-high-quality draft genome sequence of rhodococcus sp. jg-3, a eurypsychrophilic actinobacteria from antarctic dry valley permafrost
publisher Figshare
publishDate 2015
url https://dx.doi.org/10.6084/m9.figshare.c.3618833.v1
https://figshare.com/collections/Improved-high-quality_draft_genome_sequence_of_Rhodococcus_sp_JG-3_a_eurypsychrophilic_Actinobacteria_from_Antarctic_Dry_Valley_permafrost/3618833/1
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
Antarctica
permafrost
genre_facet Antarc*
Antarctic
Antarctica
permafrost
op_relation https://dx.doi.org/10.1186/s40793-015-0043-8
https://dx.doi.org/10.6084/m9.figshare.c.3618833
op_rights CC BY 4.0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.c.3618833.v1
https://doi.org/10.1186/s40793-015-0043-8
https://doi.org/10.6084/m9.figshare.c.3618833
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