MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiim...
Main Authors: | , , , , , , , , |
---|---|
Format: | Text |
Language: | unknown |
Published: |
figshare
2019
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.8426201 https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201 |
id |
ftdatacite:10.6084/m9.figshare.8426201 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.6084/m9.figshare.8426201 2023-05-15T13:43:39+02:00 MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change Vause, Belinda Morley, Simon Fonseca, Vera JaĹźdĹźewska, Anna Ashton, Gail Barnes, David Giebner, Hendrik Clark, Melody Peck, Lloyd 2019 https://dx.doi.org/10.6084/m9.figshare.8426201 https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201 unknown figshare https://dx.doi.org/10.1186/s12898-019-0244-x Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Genetics FOS Biological sciences Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 60506 Virology Text article-journal Journal contribution ScholarlyArticle 2019 ftdatacite https://doi.org/10.6084/m9.figshare.8426201 https://doi.org/10.1186/s12898-019-0244-x 2021-11-05T12:55:41Z Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiime2. ASVs assigned to both Eukaryotes and Metazoa are shown for the different BLAST sequence identity matches (90%, 95% and 97%) and also Not assigned ASVs for both markers using 95% BLAST match. Shaded grey; data used for ecological patterns and community profiles at higher taxonomic ranking. (*) ASVs used to compare species identification detected by eDNA and morphology. Amplicon Sequence Variants; ASVs. Text Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 60506 Virology |
spellingShingle |
Genetics FOS Biological sciences Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 60506 Virology Vause, Belinda Morley, Simon Fonseca, Vera JaĹźdĹźewska, Anna Ashton, Gail Barnes, David Giebner, Hendrik Clark, Melody Peck, Lloyd MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
topic_facet |
Genetics FOS Biological sciences Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 60506 Virology |
description |
Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiime2. ASVs assigned to both Eukaryotes and Metazoa are shown for the different BLAST sequence identity matches (90%, 95% and 97%) and also Not assigned ASVs for both markers using 95% BLAST match. Shaded grey; data used for ecological patterns and community profiles at higher taxonomic ranking. (*) ASVs used to compare species identification detected by eDNA and morphology. Amplicon Sequence Variants; ASVs. |
format |
Text |
author |
Vause, Belinda Morley, Simon Fonseca, Vera JaĹźdĹźewska, Anna Ashton, Gail Barnes, David Giebner, Hendrik Clark, Melody Peck, Lloyd |
author_facet |
Vause, Belinda Morley, Simon Fonseca, Vera JaĹźdĹźewska, Anna Ashton, Gail Barnes, David Giebner, Hendrik Clark, Melody Peck, Lloyd |
author_sort |
Vause, Belinda |
title |
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
title_short |
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
title_full |
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
title_fullStr |
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
title_full_unstemmed |
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
title_sort |
moesm3 of spatial and temporal dynamics of antarctic shallow soft-bottom benthic communities: ecological drivers under climate change |
publisher |
figshare |
publishDate |
2019 |
url |
https://dx.doi.org/10.6084/m9.figshare.8426201 https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201 |
geographic |
Antarctic |
geographic_facet |
Antarctic |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
https://dx.doi.org/10.1186/s12898-019-0244-x |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.8426201 https://doi.org/10.1186/s12898-019-0244-x |
_version_ |
1766191605000175616 |