MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change

Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiim...

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Main Authors: Vause, Belinda, Morley, Simon, Fonseca, Vera, JaĹźdĹźewska, Anna, Ashton, Gail, Barnes, David, Giebner, Hendrik, Clark, Melody, Peck, Lloyd
Format: Text
Language:unknown
Published: figshare 2019
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Online Access:https://dx.doi.org/10.6084/m9.figshare.8426201
https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201
id ftdatacite:10.6084/m9.figshare.8426201
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spelling ftdatacite:10.6084/m9.figshare.8426201 2023-05-15T13:43:39+02:00 MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change Vause, Belinda Morley, Simon Fonseca, Vera JaĹźdĹźewska, Anna Ashton, Gail Barnes, David Giebner, Hendrik Clark, Melody Peck, Lloyd 2019 https://dx.doi.org/10.6084/m9.figshare.8426201 https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201 unknown figshare https://dx.doi.org/10.1186/s12898-019-0244-x Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Genetics FOS Biological sciences Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 60506 Virology Text article-journal Journal contribution ScholarlyArticle 2019 ftdatacite https://doi.org/10.6084/m9.figshare.8426201 https://doi.org/10.1186/s12898-019-0244-x 2021-11-05T12:55:41Z Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiime2. ASVs assigned to both Eukaryotes and Metazoa are shown for the different BLAST sequence identity matches (90%, 95% and 97%) and also Not assigned ASVs for both markers using 95% BLAST match. Shaded grey; data used for ecological patterns and community profiles at higher taxonomic ranking. (*) ASVs used to compare species identification detected by eDNA and morphology. Amplicon Sequence Variants; ASVs. Text Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Genetics
FOS Biological sciences
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Inorganic Chemistry
FOS Chemical sciences
60506 Virology
spellingShingle Genetics
FOS Biological sciences
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Inorganic Chemistry
FOS Chemical sciences
60506 Virology
Vause, Belinda
Morley, Simon
Fonseca, Vera
JaĹźdĹźewska, Anna
Ashton, Gail
Barnes, David
Giebner, Hendrik
Clark, Melody
Peck, Lloyd
MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
topic_facet Genetics
FOS Biological sciences
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Inorganic Chemistry
FOS Chemical sciences
60506 Virology
description Additional file 3: Table S4. Summary results of the metabarcoding in silico analysis for both markers tested (COI and 18S rRNA) using QIIME2. Total number of raw reads and reads after each step in the pipelines are shown as well as total number of Amplicon Sequence Variants (ASVs) after running Qiime2. ASVs assigned to both Eukaryotes and Metazoa are shown for the different BLAST sequence identity matches (90%, 95% and 97%) and also Not assigned ASVs for both markers using 95% BLAST match. Shaded grey; data used for ecological patterns and community profiles at higher taxonomic ranking. (*) ASVs used to compare species identification detected by eDNA and morphology. Amplicon Sequence Variants; ASVs.
format Text
author Vause, Belinda
Morley, Simon
Fonseca, Vera
JaĹźdĹźewska, Anna
Ashton, Gail
Barnes, David
Giebner, Hendrik
Clark, Melody
Peck, Lloyd
author_facet Vause, Belinda
Morley, Simon
Fonseca, Vera
JaĹźdĹźewska, Anna
Ashton, Gail
Barnes, David
Giebner, Hendrik
Clark, Melody
Peck, Lloyd
author_sort Vause, Belinda
title MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
title_short MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
title_full MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
title_fullStr MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
title_full_unstemmed MOESM3 of Spatial and temporal dynamics of Antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
title_sort moesm3 of spatial and temporal dynamics of antarctic shallow soft-bottom benthic communities: ecological drivers under climate change
publisher figshare
publishDate 2019
url https://dx.doi.org/10.6084/m9.figshare.8426201
https://springernature.figshare.com/articles/MOESM3_of_Spatial_and_temporal_dynamics_of_Antarctic_shallow_soft-bottom_benthic_communities_ecological_drivers_under_climate_change/8426201
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
genre_facet Antarc*
Antarctic
op_relation https://dx.doi.org/10.1186/s12898-019-0244-x
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.8426201
https://doi.org/10.1186/s12898-019-0244-x
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