Additional file 2: of Piscine orthoreovirus sequences in escaped farmed Atlantic salmon in Washington and British Columbia

• Main Authors: Kibenge, Molly, Yingwei Wang, Gayeski, Nick, Morton, Alexandra, Beardslee, Kurt, McMillan, Bill, Kibenge, Frederick
• Format: Text
• Language: unknown
• Published: figshare 2019
• Subjects: Biochemistry; Genetics; FOS Biological sciences; Molecular Biology; 59999 Environmental Sciences not elsewhere classified; FOS Earth and related environmental sciences; Ecology; 69999 Biological Sciences not elsewhere classified; Developmental Biology; Inorganic Chemistry; FOS Chemical sciences; Plant Biology; 60506 Virology; Atlantic salmon
• Online Access: https://dx.doi.org/10.6084/m9.figshare.7943885.v1; https://springernature.figshare.com/articles/Additional_file_2_of_Piscine_orthoreovirus_sequences_in_escaped_farmed_Atlantic_salmon_in_Washington_and_British_Columbia/7943885/1

Figure S1. The phylogenetic tree of all PRV S1 segment sequences analyzed in this study (175 sequences) was constructed using Maximum Likelihood analysis using PhyML [55]. An outgroup (GenBank accession number: AF059720) was used to determine its root, but the outgroup itself was not included in the tree. The bootstrapping procedure was applied for 1000 times and the branches with 70% or higher bootstrapping support values were marked: each bootstrapping value corresponds to the branch on the same vertical level. The classification of PRV into two genotypes (I and II) and four sub-genotypes (Ia, Ib, IIa, and IIb) is also shown. The PRV S1 segment sequences obtained in this study from the samples of escaped farmed Atlantic salmon and the market-bought fish labeled â Product of Icelandâ are highlighted in yellow (PDF 31 kb)