Regional climate affects salmon lice dynamics, stage structure, and management
REGIONAL CLIMATE AFFECTS SALMON LICE DYNAMICS, STAGE STRUCTURE, AND MANAGEMENT by Amy Hurford, Xiunan Wang, and Xiao-Qiang Zhao Contact: Amy Hurford, ahurford@mun.ca Several of these codes have dependencies on the PBSddesolve package. CODE TO MAKE FIGURES (have dependencies on *.Rdata files) (1) Fig...
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ftdatacite:10.6084/m9.figshare.7824152.v1 2023-05-15T17:22:51+02:00 Regional climate affects salmon lice dynamics, stage structure, and management Hurford, Amy 2019 https://dx.doi.org/10.6084/m9.figshare.7824152.v1 https://figshare.com/articles/Regional_climate_affects_salmon_lice_dynamics_stage_structure_and_management/7824152/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.7824152 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60299 Ecology not elsewhere classified FOS Biological sciences dataset Dataset 2019 ftdatacite https://doi.org/10.6084/m9.figshare.7824152.v1 https://doi.org/10.6084/m9.figshare.7824152 2021-11-05T12:55:41Z REGIONAL CLIMATE AFFECTS SALMON LICE DYNAMICS, STAGE STRUCTURE, AND MANAGEMENT by Amy Hurford, Xiunan Wang, and Xiao-Qiang Zhao Contact: Amy Hurford, ahurford@mun.ca Several of these codes have dependencies on the PBSddesolve package. CODE TO MAKE FIGURES (have dependencies on *.Rdata files) (1) Figure1_map.R: makes FIGURE 1: Map and temperature and salinity plots (2) Figure2_ParamsFunc.R: makes FIGURE 2: fits of functions for lab data describing life history parameters as a function of temperature and salinity. The output ParamsFunc.Rdata is called by subsequent codes. (3) Figure3_R0Graphs.R makes FIGURE 3. This file calls Summary.Rdata, the output of R0Calcs.R. (4) Figure3_R0Calcs.R: performs the calculations underlying FIGURE 3. (5) Figure4_GenerationTime.R: makes FIGURE 4. (6) FigureS1_NumericalMethods.R: makes FIGURE S1. =============== DATA FILES (7) Data_Extraction.csv: The raw data extracted from the sources as listed in Section S1 of Hurford et al. Site abbreviations are described in detail in Section S1 of Hurford et al. (8) CH.Rdata: Parameters and data for the site in Chile (CH). This file is called by other codes. (9) IM3.Rdata: Parameters and data for the site a site off the coast of Ireland (IM3). (10) IM4.Rdata: Parameters and data for the site a site off the coast of Ireland (IM4). (11) farm24.Rdata: Parameters and data for the site in the Broughton Archipegalo (BCB). (12) farmWCVI.Rdata: … for a site on the west coast of Vancouver Island (BCV). (13) farmCC.Rdata: … for a site on the central coast of BC (BCC). (14) farmNB.Rdata: … for a site in New Brunswick (NB). (15) farmNS.Rdata: … for a site in Nova Scotia (NS). (16) farmNL.Rdata: ... data is from Newfoundland (NL). (17) farmNLI.Rdata: … for the Lista site in Norway (NLI). (18) farmNIN.Rdata: … for the Ingoy site in Norway (NIN). (19) ParamsFuncs.Rdata: Save parameterized functions (see Figure 2) (20) Summary.Rdata: produced by Figure3_R0Calcs.R and loaded by Figure3_R0Graphs.R Dataset Newfoundland DataCite Metadata Store (German National Library of Science and Technology) Norway |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
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ftdatacite |
language |
unknown |
topic |
60299 Ecology not elsewhere classified FOS Biological sciences |
spellingShingle |
60299 Ecology not elsewhere classified FOS Biological sciences Hurford, Amy Regional climate affects salmon lice dynamics, stage structure, and management |
topic_facet |
60299 Ecology not elsewhere classified FOS Biological sciences |
description |
REGIONAL CLIMATE AFFECTS SALMON LICE DYNAMICS, STAGE STRUCTURE, AND MANAGEMENT by Amy Hurford, Xiunan Wang, and Xiao-Qiang Zhao Contact: Amy Hurford, ahurford@mun.ca Several of these codes have dependencies on the PBSddesolve package. CODE TO MAKE FIGURES (have dependencies on *.Rdata files) (1) Figure1_map.R: makes FIGURE 1: Map and temperature and salinity plots (2) Figure2_ParamsFunc.R: makes FIGURE 2: fits of functions for lab data describing life history parameters as a function of temperature and salinity. The output ParamsFunc.Rdata is called by subsequent codes. (3) Figure3_R0Graphs.R makes FIGURE 3. This file calls Summary.Rdata, the output of R0Calcs.R. (4) Figure3_R0Calcs.R: performs the calculations underlying FIGURE 3. (5) Figure4_GenerationTime.R: makes FIGURE 4. (6) FigureS1_NumericalMethods.R: makes FIGURE S1. =============== DATA FILES (7) Data_Extraction.csv: The raw data extracted from the sources as listed in Section S1 of Hurford et al. Site abbreviations are described in detail in Section S1 of Hurford et al. (8) CH.Rdata: Parameters and data for the site in Chile (CH). This file is called by other codes. (9) IM3.Rdata: Parameters and data for the site a site off the coast of Ireland (IM3). (10) IM4.Rdata: Parameters and data for the site a site off the coast of Ireland (IM4). (11) farm24.Rdata: Parameters and data for the site in the Broughton Archipegalo (BCB). (12) farmWCVI.Rdata: … for a site on the west coast of Vancouver Island (BCV). (13) farmCC.Rdata: … for a site on the central coast of BC (BCC). (14) farmNB.Rdata: … for a site in New Brunswick (NB). (15) farmNS.Rdata: … for a site in Nova Scotia (NS). (16) farmNL.Rdata: ... data is from Newfoundland (NL). (17) farmNLI.Rdata: … for the Lista site in Norway (NLI). (18) farmNIN.Rdata: … for the Ingoy site in Norway (NIN). (19) ParamsFuncs.Rdata: Save parameterized functions (see Figure 2) (20) Summary.Rdata: produced by Figure3_R0Calcs.R and loaded by Figure3_R0Graphs.R |
format |
Dataset |
author |
Hurford, Amy |
author_facet |
Hurford, Amy |
author_sort |
Hurford, Amy |
title |
Regional climate affects salmon lice dynamics, stage structure, and management |
title_short |
Regional climate affects salmon lice dynamics, stage structure, and management |
title_full |
Regional climate affects salmon lice dynamics, stage structure, and management |
title_fullStr |
Regional climate affects salmon lice dynamics, stage structure, and management |
title_full_unstemmed |
Regional climate affects salmon lice dynamics, stage structure, and management |
title_sort |
regional climate affects salmon lice dynamics, stage structure, and management |
publisher |
figshare |
publishDate |
2019 |
url |
https://dx.doi.org/10.6084/m9.figshare.7824152.v1 https://figshare.com/articles/Regional_climate_affects_salmon_lice_dynamics_stage_structure_and_management/7824152/1 |
geographic |
Norway |
geographic_facet |
Norway |
genre |
Newfoundland |
genre_facet |
Newfoundland |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.7824152 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.7824152.v1 https://doi.org/10.6084/m9.figshare.7824152 |
_version_ |
1766109735325532160 |