Crassostrea gigas high-throughput bisulfite sequencing (gill tissue)

• Main Authors: Gavery, Mackenzie, Roberts, Steven
• Format: Dataset
• Language: unknown
• Published: figshare 2013
• Subjects: Physiology; FOS Biological sciences; Marine Biology; 60102 Bioinformatics; FOS Computer and information sciences; Genetics; Molecular Biology; Pacific; Fang; Crassostrea gigas; Pacific oyster
• Online Access: https://dx.doi.org/10.6084/m9.figshare.749728; https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_gill_tissue_/749728

This fileset contains genomic feature tracks from methylation-enriched high-throughput bisulfite sequencing and RNA-seq analysis for Pacific oyster ( Crassostrea gigas ) gill tissue. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Fang et al. 2012). All data and instructions are also available at http://oystergen.es/bigill. File descriptions: BiGill_CpG_methylation.igv - Location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. BiGill_exon_clc_rpkm.igv - Exon-specific gene expression values (RPKM) from RNA-seq analysis. BiGill_igv_charlie.xml - A session file, which loads methylation and RNA-seq feature tracks as well as the location of C.gigas genome features. Query to derive_CG_AllData_IGV.txt - Query (SQLShare) used to derive the methylation feature track from the original methratio output (http://goo.gl/5LGq9Q) Reference: Fang X, Li L, Luo R, Xu F, Wang X, Zhu Y, Yang L, Huang Z. 2012. Genomic data from the Pacific oyster ( Crassostrea gigas ). GigaScience. http://dx.doi.org/10.5524/100030.