Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlighted in blue. The cDNA sequence named as â htra1b_assemblyâ was assembled using the Salmo salar EST seque...
Main Authors: | , , , , , |
---|---|
Format: | Text |
Language: | unknown |
Published: |
figshare
2018
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.7295213 https://springernature.figshare.com/articles/Additional_file_7_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295213 |
id |
ftdatacite:10.6084/m9.figshare.7295213 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.6084/m9.figshare.7295213 2023-05-15T15:32:15+02:00 Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil Caballero-Solares, Albert Xue, Xi Parrish, Christopher Foroutani, Maryam Taylor, Richard Rise, Matthew 2018 https://dx.doi.org/10.6084/m9.figshare.7295213 https://springernature.figshare.com/articles/Additional_file_7_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295213 unknown figshare https://dx.doi.org/10.1186/s12864-018-5188-6 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Biochemistry Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 110309 Infectious Diseases FOS Health sciences 60506 Virology Text article-journal Journal contribution ScholarlyArticle 2018 ftdatacite https://doi.org/10.6084/m9.figshare.7295213 https://doi.org/10.1186/s12864-018-5188-6 2021-11-05T12:55:41Z Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlighted in blue. The cDNA sequence named as â htra1b_assemblyâ was assembled using the Salmo salar EST sequences DW576053, DW556574, DW539580, EG831192, and EG831191. Htra1a and htra1b sequences share 91% identity over 1117 aligned nucleotides. The alignment and percentage identity calculation were performed using AlignX (Vector NTI Advance 11). The nucleotide regions covered by the probes C265R134, C231R170 and C170R142 from the Agilent 44Â K salmonid microarray (GEO accession number: GPL11299) is indicated within boxes. Forward qPCR primers are in bold and single underlined, whereas reverse qPCR primers are in bold and double underlined. (DOCX 37 kb) Text Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Biochemistry Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 110309 Infectious Diseases FOS Health sciences 60506 Virology |
spellingShingle |
Biochemistry Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 110309 Infectious Diseases FOS Health sciences 60506 Virology Caballero-Solares, Albert Xue, Xi Parrish, Christopher Foroutani, Maryam Taylor, Richard Rise, Matthew Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
topic_facet |
Biochemistry Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology Ecology 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences 110309 Infectious Diseases FOS Health sciences 60506 Virology |
description |
Figure S5. Alignment of nucleotide sequences corresponding to htra1a and htra1b. Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlighted in blue. The cDNA sequence named as â htra1b_assemblyâ was assembled using the Salmo salar EST sequences DW576053, DW556574, DW539580, EG831192, and EG831191. Htra1a and htra1b sequences share 91% identity over 1117 aligned nucleotides. The alignment and percentage identity calculation were performed using AlignX (Vector NTI Advance 11). The nucleotide regions covered by the probes C265R134, C231R170 and C170R142 from the Agilent 44Â K salmonid microarray (GEO accession number: GPL11299) is indicated within boxes. Forward qPCR primers are in bold and single underlined, whereas reverse qPCR primers are in bold and double underlined. (DOCX 37 kb) |
format |
Text |
author |
Caballero-Solares, Albert Xue, Xi Parrish, Christopher Foroutani, Maryam Taylor, Richard Rise, Matthew |
author_facet |
Caballero-Solares, Albert Xue, Xi Parrish, Christopher Foroutani, Maryam Taylor, Richard Rise, Matthew |
author_sort |
Caballero-Solares, Albert |
title |
Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
title_short |
Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
title_full |
Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
title_fullStr |
Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
title_full_unstemmed |
Additional file 7: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
title_sort |
additional file 7: of changes in the liver transcriptome of farmed atlantic salmon (salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil |
publisher |
figshare |
publishDate |
2018 |
url |
https://dx.doi.org/10.6084/m9.figshare.7295213 https://springernature.figshare.com/articles/Additional_file_7_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295213 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.1186/s12864-018-5188-6 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.7295213 https://doi.org/10.1186/s12864-018-5188-6 |
_version_ |
1766362756289658880 |