Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Figure S10. Alignment of nucleotide sequences corresponding to two mtco2 paralogues and the probe C060R108 from the Agilent 44Â K salmonid microarray (GEO accession number: GPL11299). Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlight...

Full description

Bibliographic Details
Main Authors: Caballero-Solares, Albert, Xue, Xi, Parrish, Christopher, Foroutani, Maryam, Taylor, Richard, Rise, Matthew
Format: Text
Language:unknown
Published: figshare 2018
Subjects:
Online Access:https://dx.doi.org/10.6084/m9.figshare.7295120
https://springernature.figshare.com/articles/Additional_file_12_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295120
id ftdatacite:10.6084/m9.figshare.7295120
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.7295120 2023-05-15T15:32:15+02:00 Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil Caballero-Solares, Albert Xue, Xi Parrish, Christopher Foroutani, Maryam Taylor, Richard Rise, Matthew 2018 https://dx.doi.org/10.6084/m9.figshare.7295120 https://springernature.figshare.com/articles/Additional_file_12_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295120 unknown figshare https://dx.doi.org/10.1186/s12864-018-5188-6 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Biochemistry Microbiology FOS Biological sciences Genetics Molecular Biology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified Developmental Biology Inorganic Chemistry FOS Chemical sciences 110309 Infectious Diseases FOS Health sciences 60506 Virology Text article-journal Journal contribution ScholarlyArticle 2018 ftdatacite https://doi.org/10.6084/m9.figshare.7295120 https://doi.org/10.1186/s12864-018-5188-6 2021-11-05T12:55:41Z Figure S10. Alignment of nucleotide sequences corresponding to two mtco2 paralogues and the probe C060R108 from the Agilent 44Â K salmonid microarray (GEO accession number: GPL11299). Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlighted in blue. Mtco2a and mtco2b sequences share 96% identity over 547 aligned nucleotides, and 83 and 85% identity compared with the 60mer microarray probe, respectively. The alignment and percentage identity calculation were performed using AlignX (Vector NTI Advance 11). Forward qPCR primers are in bold and single underlined, whereas reverse qPCR primers are in bold and double underlined. (DOCX 13 kb) Text Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Biochemistry
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Developmental Biology
Inorganic Chemistry
FOS Chemical sciences
110309 Infectious Diseases
FOS Health sciences
60506 Virology
spellingShingle Biochemistry
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Developmental Biology
Inorganic Chemistry
FOS Chemical sciences
110309 Infectious Diseases
FOS Health sciences
60506 Virology
Caballero-Solares, Albert
Xue, Xi
Parrish, Christopher
Foroutani, Maryam
Taylor, Richard
Rise, Matthew
Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
topic_facet Biochemistry
Microbiology
FOS Biological sciences
Genetics
Molecular Biology
Evolutionary Biology
59999 Environmental Sciences not elsewhere classified
FOS Earth and related environmental sciences
Ecology
69999 Biological Sciences not elsewhere classified
Developmental Biology
Inorganic Chemistry
FOS Chemical sciences
110309 Infectious Diseases
FOS Health sciences
60506 Virology
description Figure S10. Alignment of nucleotide sequences corresponding to two mtco2 paralogues and the probe C060R108 from the Agilent 44Â K salmonid microarray (GEO accession number: GPL11299). Conserved nucleotides in all three aligned sequences are highlighted in yellow, those conserved in two are highlighted in blue. Mtco2a and mtco2b sequences share 96% identity over 547 aligned nucleotides, and 83 and 85% identity compared with the 60mer microarray probe, respectively. The alignment and percentage identity calculation were performed using AlignX (Vector NTI Advance 11). Forward qPCR primers are in bold and single underlined, whereas reverse qPCR primers are in bold and double underlined. (DOCX 13 kb)
format Text
author Caballero-Solares, Albert
Xue, Xi
Parrish, Christopher
Foroutani, Maryam
Taylor, Richard
Rise, Matthew
author_facet Caballero-Solares, Albert
Xue, Xi
Parrish, Christopher
Foroutani, Maryam
Taylor, Richard
Rise, Matthew
author_sort Caballero-Solares, Albert
title Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
title_short Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
title_full Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
title_fullStr Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
title_full_unstemmed Additional file 12: of Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
title_sort additional file 12: of changes in the liver transcriptome of farmed atlantic salmon (salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
publisher figshare
publishDate 2018
url https://dx.doi.org/10.6084/m9.figshare.7295120
https://springernature.figshare.com/articles/Additional_file_12_of_Changes_in_the_liver_transcriptome_of_farmed_Atlantic_salmon_Salmo_salar_fed_experimental_diets_based_on_terrestrial_alternatives_to_fish_meal_and_fish_oil/7295120
genre Atlantic salmon
Salmo salar
genre_facet Atlantic salmon
Salmo salar
op_relation https://dx.doi.org/10.1186/s12864-018-5188-6
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.7295120
https://doi.org/10.1186/s12864-018-5188-6
_version_ 1766362755926851584