DNA methylation coverage in two tissues of the Pacific Oyster
This work aims at characterizing and comparing DNA methylation in two tissues in the Pacific oyster using the methylKit R package. Bisulfite sequencing was used to examine genome-wide DNA methylation in the oyster gonad tissue and MBD-Seq was used to examine methylation in the gill tissue. The R scr...
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ftdatacite:10.6084/m9.figshare.652964.v3 2023-05-15T17:54:13+02:00 DNA methylation coverage in two tissues of the Pacific Oyster Olson, Claire Roberts, Steven Gavery, Mackenzie 2013 https://dx.doi.org/10.6084/m9.figshare.652964.v3 https://figshare.com/articles/dataset/DNA_methylation_coverage_in_two_tissues_of_the_Pacific_Oyster/652964/3 unknown figshare https://dx.doi.org/10.6084/m9.figshare.652964 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Molecular Biology 60102 Bioinformatics FOS Computer and information sciences Ecology FOS Biological sciences dataset Dataset 2013 ftdatacite https://doi.org/10.6084/m9.figshare.652964.v3 https://doi.org/10.6084/m9.figshare.652964 2021-11-05T12:55:41Z This work aims at characterizing and comparing DNA methylation in two tissues in the Pacific oyster using the methylKit R package. Bisulfite sequencing was used to examine genome-wide DNA methylation in the oyster gonad tissue and MBD-Seq was used to examine methylation in the gill tissue. The R script used for these analyses has been provided along with some visualization outputs comparing gill and gonad tissue from the Pacific oyster. Dataset Pacific oyster DataCite Metadata Store (German National Library of Science and Technology) Pacific |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Molecular Biology 60102 Bioinformatics FOS Computer and information sciences Ecology FOS Biological sciences |
spellingShingle |
Molecular Biology 60102 Bioinformatics FOS Computer and information sciences Ecology FOS Biological sciences Olson, Claire Roberts, Steven Gavery, Mackenzie DNA methylation coverage in two tissues of the Pacific Oyster |
topic_facet |
Molecular Biology 60102 Bioinformatics FOS Computer and information sciences Ecology FOS Biological sciences |
description |
This work aims at characterizing and comparing DNA methylation in two tissues in the Pacific oyster using the methylKit R package. Bisulfite sequencing was used to examine genome-wide DNA methylation in the oyster gonad tissue and MBD-Seq was used to examine methylation in the gill tissue. The R script used for these analyses has been provided along with some visualization outputs comparing gill and gonad tissue from the Pacific oyster. |
format |
Dataset |
author |
Olson, Claire Roberts, Steven Gavery, Mackenzie |
author_facet |
Olson, Claire Roberts, Steven Gavery, Mackenzie |
author_sort |
Olson, Claire |
title |
DNA methylation coverage in two tissues of the Pacific Oyster |
title_short |
DNA methylation coverage in two tissues of the Pacific Oyster |
title_full |
DNA methylation coverage in two tissues of the Pacific Oyster |
title_fullStr |
DNA methylation coverage in two tissues of the Pacific Oyster |
title_full_unstemmed |
DNA methylation coverage in two tissues of the Pacific Oyster |
title_sort |
dna methylation coverage in two tissues of the pacific oyster |
publisher |
figshare |
publishDate |
2013 |
url |
https://dx.doi.org/10.6084/m9.figshare.652964.v3 https://figshare.com/articles/dataset/DNA_methylation_coverage_in_two_tissues_of_the_Pacific_Oyster/652964/3 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Pacific oyster |
genre_facet |
Pacific oyster |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.652964 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.652964.v3 https://doi.org/10.6084/m9.figshare.652964 |
_version_ |
1766161952584761344 |