Raw metagenomic co-assemblies

• Main Authors: Delmont, Tom, Post, Anton
• Format: Dataset
• Language: unknown
• Published: figshare 2018
• Subjects: 60102 Bioinformatics; FOS Computer and information sciences; 60202 Community Ecology excl. Invasive Species Ecology; FOS Biological sciences; Computational Biology; 60408 Genomics; 60504 Microbial Ecology; Microbiology; Molecular Biology; Antarctic; Antarctic Peninsula; Ross Sea; The Antarctic; Antarc*
• Online Access: https://dx.doi.org/10.6084/m9.figshare.6016220; https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220

Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4. PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015) PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2014) PHANTASTIC_AAC: surface water samples from the antarctic circumpolar current between the RSP and Tasmania in blooming conditions (Summer 2013-2014) My 2 cents: use the "1000nt" FASTA files to explore genes and functions, and the smaller "2500nt" FASTA files if only interested in genome-resolved metagenomics (e.g., to characterize population genomes). The later was already done using anvi'o v.4 (recovery of 73 MAGs, see second item in the same project).