Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...

Additional file 2: Table S1. Significantly changed bacterial genera resulted from pairwise comparisons of treatments. Table S2. Random Forest confusion matrix for digesta-associated microbiota. Table S3. Random Forest confusion matrix for mucosa-associated microbiota. Table S4. Summarized enriched b...

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Main Authors: Dhanasiri, Anusha K. S., Jaramillo-Torres, Alexander, Chikwati, Elvis M., Forberg, Torunn, Krogdahl, Åshild, Kortner, Trond M.
Format: Text
Language:unknown
Published: figshare 2024
Subjects:
Biochemistry
Microbiology
FOS: Biological sciences
Genetics
Physiology
Biotechnology
Chemical Sciences not elsewhere classified
Ecology
Inorganic Chemistry
FOS: Chemical sciences
Atlantic salmon
Salmo salar
Online Access:https://dx.doi.org/10.6084/m9.figshare.26567953
https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_of_Effects_of_dietary_supplementation_with_prebiotics_and_Pediococcus_acidilactici_on_gut_health_transcriptome_microbiota_and_metabolome_in_Atlantic_salmon_Salmo_salar_L_after_seawater_transfer/26567953
id ftdatacite:10.6084/m9.figshare.26567953
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.26567953 2024-09-15T17:56:14+00:00 Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ... Dhanasiri, Anusha K. S. Jaramillo-Torres, Alexander Chikwati, Elvis M. Forberg, Torunn Krogdahl, Åshild Kortner, Trond M. 2024 https://dx.doi.org/10.6084/m9.figshare.26567953 https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_of_Effects_of_dietary_supplementation_with_prebiotics_and_Pediococcus_acidilactici_on_gut_health_transcriptome_microbiota_and_metabolome_in_Atlantic_salmon_Salmo_salar_L_after_seawater_transfer/26567953 unknown figshare https://dx.doi.org/10.1016/j.aquaculture.2010.02.007 https://dx.doi.org/10.1111/anu.12349 https://dx.doi.org/10.1111/j.1365-2095.2009.00731.x https://dx.doi.org/10.1016/j.fsi.2014.06.016 https://dx.doi.org/10.1016/j.fsi.2017.03.035 https://dx.doi.org/10.1016/j.aquaculture.2017.09.020 https://dx.doi.org/10.1016/j.fsi.2013.09.039 https://dx.doi.org/10.1111/j.1365-2095.2009.00712.x https://dx.doi.org/10.1111/j.1365-2672.2010.04713.x https://dx.doi.org/10.3389/fmicb.2019.02243 https://dx.doi.org/10.1016/j.dci.2015.11.007 https://dx.doi.org/10.1016/j.fsi.2020.09.019 https://dx.doi.org/10.1093/jn/125.6.1401 https://dx.doi.org/10.3390/nu9091021 https://dx.doi.org/10.1007/s12602-018-9498-4 https://dx.doi.org/10.1080/23308249.2020.1795616 https://dx.doi.org/10.1016/j.fsi.2015.03.029 https://dx.doi.org/10.1515/aoas-2016-0024 https://dx.doi.org/10.1186/s40168-021-01221-8 https://dx.doi.org/10.1016/j.fsi.2017.09.032 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Biochemistry Microbiology FOS: Biological sciences Genetics Physiology Biotechnology Chemical Sciences not elsewhere classified Ecology Inorganic Chemistry FOS: Chemical sciences Text ScholarlyArticle article-journal Journal contribution 2024 ftdatacite https://doi.org/10.6084/m9.figshare.2656795310.1016/j.aquaculture.2010.02.00710.1111/anu.1234910.1111/j.1365-2095.2009.00731.x10.1016/j.fsi.2014.06.01610.1016/j.fsi.2017.03.03510.1016/j.aquaculture.2017.09.02010.1016/j.fsi.2013.09.03910.1111/j.1365-2095.2 2024-09-02T08:23:35Z Additional file 2: Table S1. Significantly changed bacterial genera resulted from pairwise comparisons of treatments. Table S2. Random Forest confusion matrix for digesta-associated microbiota. Table S3. Random Forest confusion matrix for mucosa-associated microbiota. Table S4. Summarized enriched biological process GO terms produced using REVIGO tool for DEGs in GOS–BC group. Table S5. SCFA concentrations in blood plasma from four treatments. ... Text Atlantic salmon Salmo salar DataCite
institution Open Polar
collection DataCite
op_collection_id ftdatacite
language unknown
topic Biochemistry
Microbiology
FOS: Biological sciences
Genetics
Physiology
Biotechnology
Chemical Sciences not elsewhere classified
Ecology
Inorganic Chemistry
FOS: Chemical sciences
spellingShingle Biochemistry
Microbiology
FOS: Biological sciences
Genetics
Physiology
Biotechnology
Chemical Sciences not elsewhere classified
Ecology
Inorganic Chemistry
FOS: Chemical sciences
Dhanasiri, Anusha K. S.
Jaramillo-Torres, Alexander
Chikwati, Elvis M.
Forberg, Torunn
Krogdahl, Åshild
Kortner, Trond M.
Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
topic_facet Biochemistry
Microbiology
FOS: Biological sciences
Genetics
Physiology
Biotechnology
Chemical Sciences not elsewhere classified
Ecology
Inorganic Chemistry
FOS: Chemical sciences
description Additional file 2: Table S1. Significantly changed bacterial genera resulted from pairwise comparisons of treatments. Table S2. Random Forest confusion matrix for digesta-associated microbiota. Table S3. Random Forest confusion matrix for mucosa-associated microbiota. Table S4. Summarized enriched biological process GO terms produced using REVIGO tool for DEGs in GOS–BC group. Table S5. SCFA concentrations in blood plasma from four treatments. ...
format Text
author Dhanasiri, Anusha K. S.
Jaramillo-Torres, Alexander
Chikwati, Elvis M.
Forberg, Torunn
Krogdahl, Åshild
Kortner, Trond M.
author_facet Dhanasiri, Anusha K. S.
Jaramillo-Torres, Alexander
Chikwati, Elvis M.
Forberg, Torunn
Krogdahl, Åshild
Kortner, Trond M.
author_sort Dhanasiri, Anusha K. S.
title Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
title_short Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
title_full Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
title_fullStr Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
title_full_unstemmed Additional file 2 of Effects of dietary supplementation with prebiotics and Pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in Atlantic salmon (Salmo salar L.) after seawater transfer ...
title_sort additional file 2 of effects of dietary supplementation with prebiotics and pediococcus acidilactici on gut health, transcriptome, microbiota, and metabolome in atlantic salmon (salmo salar l.) after seawater transfer ...
publisher figshare
publishDate 2024
url https://dx.doi.org/10.6084/m9.figshare.26567953
https://springernature.figshare.com/articles/journal_contribution/Additional_file_2_of_Effects_of_dietary_supplementation_with_prebiotics_and_Pediococcus_acidilactici_on_gut_health_transcriptome_microbiota_and_metabolome_in_Atlantic_salmon_Salmo_salar_L_after_seawater_transfer/26567953
genre Atlantic salmon
Salmo salar
genre_facet Atlantic salmon
Salmo salar
op_relation https://dx.doi.org/10.1016/j.aquaculture.2010.02.007
https://dx.doi.org/10.1111/anu.12349
https://dx.doi.org/10.1111/j.1365-2095.2009.00731.x
https://dx.doi.org/10.1016/j.fsi.2014.06.016
https://dx.doi.org/10.1016/j.fsi.2017.03.035
https://dx.doi.org/10.1016/j.aquaculture.2017.09.020
https://dx.doi.org/10.1016/j.fsi.2013.09.039
https://dx.doi.org/10.1111/j.1365-2095.2009.00712.x
https://dx.doi.org/10.1111/j.1365-2672.2010.04713.x
https://dx.doi.org/10.3389/fmicb.2019.02243
https://dx.doi.org/10.1016/j.dci.2015.11.007
https://dx.doi.org/10.1016/j.fsi.2020.09.019
https://dx.doi.org/10.1093/jn/125.6.1401
https://dx.doi.org/10.3390/nu9091021
https://dx.doi.org/10.1007/s12602-018-9498-4
https://dx.doi.org/10.1080/23308249.2020.1795616
https://dx.doi.org/10.1016/j.fsi.2015.03.029
https://dx.doi.org/10.1515/aoas-2016-0024
https://dx.doi.org/10.1186/s40168-021-01221-8
https://dx.doi.org/10.1016/j.fsi.2017.09.032
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.6084/m9.figshare.2656795310.1016/j.aquaculture.2010.02.00710.1111/anu.1234910.1111/j.1365-2095.2009.00731.x10.1016/j.fsi.2014.06.01610.1016/j.fsi.2017.03.03510.1016/j.aquaculture.2017.09.02010.1016/j.fsi.2013.09.03910.1111/j.1365-2095.2
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