Additional file 1 of Giant viral signatures on the Greenland ice sheet ...
Additional file 1. Figure S1-S7: Maximum-likelihood phylogenetic tree of the NCLDV core gene D5, RNAps, RNApl, MCP, mRNAc, A32, SFII, VLTF3, RNR. Sequences recovered from the environmental samples are presented in bold. Environmental sample types are specified in correspondence of each sequence. Bra...
Main Authors: | , , , , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
figshare
2024
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.25853006 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Giant_viral_signatures_on_the_Greenland_ice_sheet/25853006 |
id |
ftdatacite:10.6084/m9.figshare.25853006 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.6084/m9.figshare.25853006 2024-09-15T18:09:48+00:00 Additional file 1 of Giant viral signatures on the Greenland ice sheet ... Perini, Laura Sipes, Katie Zervas, Athanasios Bellas, Christopher Lutz, Stefanie Moniruzzaman, Mohammad Mourot, Rey Benning, Liane G. Tranter, Martyn Anesio, Alexandre M. 2024 https://dx.doi.org/10.6084/m9.figshare.25853006 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Giant_viral_signatures_on_the_Greenland_ice_sheet/25853006 unknown figshare https://dx.doi.org/10.1111/jpy.12952 https://dx.doi.org/10.1371/journal.pone.0112510 https://dx.doi.org/10.1093/femsec/fiy025 https://dx.doi.org/10.1111/1574-6941.12351 https://dx.doi.org/10.1111/pre.12025 https://dx.doi.org/10.1093/femsec/fiz064 https://dx.doi.org/10.1111/1462-2920.13494 https://dx.doi.org/10.3389/fmicb.2015.00307 https://dx.doi.org/10.3389/fpls.2021.671981 https://dx.doi.org/10.1099/mgen.0.000159 https://dx.doi.org/10.1002/2017gl075958 https://dx.doi.org/10.5194/tc-14-309-2020 https://dx.doi.org/10.1038/ncomms11968 https://dx.doi.org/10.3389/fmicb.2019.00524 https://dx.doi.org/10.1128/aem.01160-21 https://dx.doi.org/10.1038/ismej.2013.59 https://dx.doi.org/10.1128/mbio.02497-18 https://dx.doi.org/10.3389/fmicb.2015.00656 https://dx.doi.org/10.1088/1748-9326/8/4/045021 https://dx.doi.org/10.1007/s00792-013-0569-x Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Microbiology FOS: Biological sciences Genetics Dataset dataset 2024 ftdatacite https://doi.org/10.6084/m9.figshare.2585300610.1111/jpy.1295210.1371/journal.pone.011251010.1093/femsec/fiy02510.1111/1574-6941.1235110.1111/pre.1202510.1093/femsec/fiz06410.1111/1462-2920.1349410.3389/fmicb.2015.0030710.3389/fpls.2021.67198110.1099/mgen. 2024-09-02T08:51:48Z Additional file 1. Figure S1-S7: Maximum-likelihood phylogenetic tree of the NCLDV core gene D5, RNAps, RNApl, MCP, mRNAc, A32, SFII, VLTF3, RNR. Sequences recovered from the environmental samples are presented in bold. Environmental sample types are specified in correspondence of each sequence. Branches are color-coded by order-level taxonomy. Dark dots at the nodes represent the bootstrap support value of >70. Figure S8: Normalized counts of the NCLDV marker genes by each assembly size for all the samples in this study. Analysis was carried out in 19 environmental metagenomes (MG) and 18 environmental metatranscriptomes (pooled) obtained from samples of cryoconite (n=1), ice core (n=3), green snow (n=2), red snow (n=5), dark ice (n=8), one metavirome (dark ice) and five snow algae culture genomic assemblies from the CCCryo collection. The ‘md’ (more depth) notation following select samples are those that were re-sequenced with higher metagenomic coverage. Symbols represent the sample types. Figure S9: ... Dataset Greenland ice core Ice Sheet DataCite |
institution |
Open Polar |
collection |
DataCite |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS: Biological sciences Genetics |
spellingShingle |
Microbiology FOS: Biological sciences Genetics Perini, Laura Sipes, Katie Zervas, Athanasios Bellas, Christopher Lutz, Stefanie Moniruzzaman, Mohammad Mourot, Rey Benning, Liane G. Tranter, Martyn Anesio, Alexandre M. Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
topic_facet |
Microbiology FOS: Biological sciences Genetics |
description |
Additional file 1. Figure S1-S7: Maximum-likelihood phylogenetic tree of the NCLDV core gene D5, RNAps, RNApl, MCP, mRNAc, A32, SFII, VLTF3, RNR. Sequences recovered from the environmental samples are presented in bold. Environmental sample types are specified in correspondence of each sequence. Branches are color-coded by order-level taxonomy. Dark dots at the nodes represent the bootstrap support value of >70. Figure S8: Normalized counts of the NCLDV marker genes by each assembly size for all the samples in this study. Analysis was carried out in 19 environmental metagenomes (MG) and 18 environmental metatranscriptomes (pooled) obtained from samples of cryoconite (n=1), ice core (n=3), green snow (n=2), red snow (n=5), dark ice (n=8), one metavirome (dark ice) and five snow algae culture genomic assemblies from the CCCryo collection. The ‘md’ (more depth) notation following select samples are those that were re-sequenced with higher metagenomic coverage. Symbols represent the sample types. Figure S9: ... |
format |
Dataset |
author |
Perini, Laura Sipes, Katie Zervas, Athanasios Bellas, Christopher Lutz, Stefanie Moniruzzaman, Mohammad Mourot, Rey Benning, Liane G. Tranter, Martyn Anesio, Alexandre M. |
author_facet |
Perini, Laura Sipes, Katie Zervas, Athanasios Bellas, Christopher Lutz, Stefanie Moniruzzaman, Mohammad Mourot, Rey Benning, Liane G. Tranter, Martyn Anesio, Alexandre M. |
author_sort |
Perini, Laura |
title |
Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
title_short |
Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
title_full |
Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
title_fullStr |
Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
title_full_unstemmed |
Additional file 1 of Giant viral signatures on the Greenland ice sheet ... |
title_sort |
additional file 1 of giant viral signatures on the greenland ice sheet ... |
publisher |
figshare |
publishDate |
2024 |
url |
https://dx.doi.org/10.6084/m9.figshare.25853006 https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Giant_viral_signatures_on_the_Greenland_ice_sheet/25853006 |
genre |
Greenland ice core Ice Sheet |
genre_facet |
Greenland ice core Ice Sheet |
op_relation |
https://dx.doi.org/10.1111/jpy.12952 https://dx.doi.org/10.1371/journal.pone.0112510 https://dx.doi.org/10.1093/femsec/fiy025 https://dx.doi.org/10.1111/1574-6941.12351 https://dx.doi.org/10.1111/pre.12025 https://dx.doi.org/10.1093/femsec/fiz064 https://dx.doi.org/10.1111/1462-2920.13494 https://dx.doi.org/10.3389/fmicb.2015.00307 https://dx.doi.org/10.3389/fpls.2021.671981 https://dx.doi.org/10.1099/mgen.0.000159 https://dx.doi.org/10.1002/2017gl075958 https://dx.doi.org/10.5194/tc-14-309-2020 https://dx.doi.org/10.1038/ncomms11968 https://dx.doi.org/10.3389/fmicb.2019.00524 https://dx.doi.org/10.1128/aem.01160-21 https://dx.doi.org/10.1038/ismej.2013.59 https://dx.doi.org/10.1128/mbio.02497-18 https://dx.doi.org/10.3389/fmicb.2015.00656 https://dx.doi.org/10.1088/1748-9326/8/4/045021 https://dx.doi.org/10.1007/s00792-013-0569-x |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.2585300610.1111/jpy.1295210.1371/journal.pone.011251010.1093/femsec/fiy02510.1111/1574-6941.1235110.1111/pre.1202510.1093/femsec/fiz06410.1111/1462-2920.1349410.3389/fmicb.2015.0030710.3389/fpls.2021.67198110.1099/mgen. |
_version_ |
1810447389172957184 |