Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ...
Additional file 2: Table S1. Metadata and physicochemical properties of the samples collected for this study. Table S2. List of metabolic pathways (obtained from metacyc) involved in the degradation of lignin-derived aromatic compounds and their EC numbers. KO numbers, protein names and enzyme funct...
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ftdatacite:10.6084/m9.figshare.22615282 2023-06-11T04:09:28+02:00 Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... Grevesse, Thomas Guéguen, Céline Onana, Vera E. Walsh, David A. 2023 https://dx.doi.org/10.6084/m9.figshare.22615282 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Degradation_pathways_for_organic_matter_of_terrestrial_origin_are_widespread_and_expressed_in_Arctic_Ocean_microbiomes/22615282 unknown figshare https://dx.doi.org/10.1186/s40168-022-01417-6 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Microbiology FOS Biological sciences Oceanography FOS Earth and related environmental sciences Dataset dataset 2023 ftdatacite https://doi.org/10.6084/m9.figshare.2261528210.1186/s40168-022-01417-6 2023-05-02T10:05:05Z Additional file 2: Table S1. Metadata and physicochemical properties of the samples collected for this study. Table S2. List of metabolic pathways (obtained from metacyc) involved in the degradation of lignin-derived aromatic compounds and their EC numbers. KO numbers, protein names and enzyme functions information is included for reactions identified as markers for these pathways. Table S3. Properties of the 46 MAGs most implicated in the degradation of aromatic compounds. Genome size, completeness, contamination, N50 values, number of genes and GC content were obtained using CheckM. The GTDB taxonomy was obtained using the nearest placement in a phylogenetic tree with the GTDBTk. The NCBI taxonomy was obtained using the nearest placement in a phylogenetic tree with CheckM.Table S4. Information and sources of genomes from other studies used in this study. Table S5. Properties of the 16 Alphaproteobacteria MAGs most implicated in the degradation of aromatic compounds and representative of the genomospecies, ... Dataset Arctic Arctic Ocean DataCite Metadata Store (German National Library of Science and Technology) Arctic Arctic Ocean |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences Oceanography FOS Earth and related environmental sciences |
spellingShingle |
Microbiology FOS Biological sciences Oceanography FOS Earth and related environmental sciences Grevesse, Thomas Guéguen, Céline Onana, Vera E. Walsh, David A. Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
topic_facet |
Microbiology FOS Biological sciences Oceanography FOS Earth and related environmental sciences |
description |
Additional file 2: Table S1. Metadata and physicochemical properties of the samples collected for this study. Table S2. List of metabolic pathways (obtained from metacyc) involved in the degradation of lignin-derived aromatic compounds and their EC numbers. KO numbers, protein names and enzyme functions information is included for reactions identified as markers for these pathways. Table S3. Properties of the 46 MAGs most implicated in the degradation of aromatic compounds. Genome size, completeness, contamination, N50 values, number of genes and GC content were obtained using CheckM. The GTDB taxonomy was obtained using the nearest placement in a phylogenetic tree with the GTDBTk. The NCBI taxonomy was obtained using the nearest placement in a phylogenetic tree with CheckM.Table S4. Information and sources of genomes from other studies used in this study. Table S5. Properties of the 16 Alphaproteobacteria MAGs most implicated in the degradation of aromatic compounds and representative of the genomospecies, ... |
format |
Dataset |
author |
Grevesse, Thomas Guéguen, Céline Onana, Vera E. Walsh, David A. |
author_facet |
Grevesse, Thomas Guéguen, Céline Onana, Vera E. Walsh, David A. |
author_sort |
Grevesse, Thomas |
title |
Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
title_short |
Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
title_full |
Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
title_fullStr |
Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
title_full_unstemmed |
Additional file 2 of Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes ... |
title_sort |
additional file 2 of degradation pathways for organic matter of terrestrial origin are widespread and expressed in arctic ocean microbiomes ... |
publisher |
figshare |
publishDate |
2023 |
url |
https://dx.doi.org/10.6084/m9.figshare.22615282 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Degradation_pathways_for_organic_matter_of_terrestrial_origin_are_widespread_and_expressed_in_Arctic_Ocean_microbiomes/22615282 |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean |
genre_facet |
Arctic Arctic Ocean |
op_relation |
https://dx.doi.org/10.1186/s40168-022-01417-6 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.2261528210.1186/s40168-022-01417-6 |
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1768383354571325440 |