Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain
Additional file 2: Table S1. Top 50 keystone gut microbiota identified through network analysis; Table S2. Top 50 keystone gill microbiota identified through network analysis; Table S3. Top 50 keystone skin microbiota identified through network analysis; Table S4. Differentially abundant inferred me...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.19342952 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Functional_feeds_marginally_alter_immune_expression_and_microbiota_of_Atlantic_salmon_Salmo_salar_gut_gill_and_skin_mucosa_though_evidence_of_tissue-specific_signatures_and_host_microbe_coadaptation_remain/19342952 |
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ftdatacite:10.6084/m9.figshare.19342952 2023-05-15T15:32:19+02:00 Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain Bledsoe, Jacob W. Pietrak, Michael R. Burr, Gary S. Peterson, Brian C. Small, Brian C. 2022 https://dx.doi.org/10.6084/m9.figshare.19342952 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Functional_feeds_marginally_alter_immune_expression_and_microbiota_of_Atlantic_salmon_Salmo_salar_gut_gill_and_skin_mucosa_though_evidence_of_tissue-specific_signatures_and_host_microbe_coadaptation_remain/19342952 unknown figshare https://dx.doi.org/10.1186/s42523-022-00173-0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Genetics Physiology Ecology Immunology FOS Clinical medicine 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences Dataset dataset 2022 ftdatacite https://doi.org/10.6084/m9.figshare.19342952 https://doi.org/10.1186/s42523-022-00173-0 2022-04-01T13:26:03Z Additional file 2: Table S1. Top 50 keystone gut microbiota identified through network analysis; Table S2. Top 50 keystone gill microbiota identified through network analysis; Table S3. Top 50 keystone skin microbiota identified through network analysis; Table S4. Differentially abundant inferred metagenomic KEGG Orthologs (KO) across mucosal tissues; Table S5. Differentially abundant inferred metagenomic KEGG Enzyme Commission (EC) codes across mucosal tissues; Table S6. Differentially abundant inferred metagenomic MetaCyc pathways across mucosal tissues; Table S7. Primer sequences used for RT-qPCR. Primers with listed references were taken from previously published literature, after confirming specificity in-silico, and all other primers were designed using NCBI Primer-BLAST with the listed accession as the target. NCBI accessions are taken from RefSeq where possible, with those accessions denoted by * coming from GenBank. Dataset Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences Genetics Physiology Ecology Immunology FOS Clinical medicine 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences |
spellingShingle |
Microbiology FOS Biological sciences Genetics Physiology Ecology Immunology FOS Clinical medicine 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences Bledsoe, Jacob W. Pietrak, Michael R. Burr, Gary S. Peterson, Brian C. Small, Brian C. Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
topic_facet |
Microbiology FOS Biological sciences Genetics Physiology Ecology Immunology FOS Clinical medicine 69999 Biological Sciences not elsewhere classified Inorganic Chemistry FOS Chemical sciences |
description |
Additional file 2: Table S1. Top 50 keystone gut microbiota identified through network analysis; Table S2. Top 50 keystone gill microbiota identified through network analysis; Table S3. Top 50 keystone skin microbiota identified through network analysis; Table S4. Differentially abundant inferred metagenomic KEGG Orthologs (KO) across mucosal tissues; Table S5. Differentially abundant inferred metagenomic KEGG Enzyme Commission (EC) codes across mucosal tissues; Table S6. Differentially abundant inferred metagenomic MetaCyc pathways across mucosal tissues; Table S7. Primer sequences used for RT-qPCR. Primers with listed references were taken from previously published literature, after confirming specificity in-silico, and all other primers were designed using NCBI Primer-BLAST with the listed accession as the target. NCBI accessions are taken from RefSeq where possible, with those accessions denoted by * coming from GenBank. |
format |
Dataset |
author |
Bledsoe, Jacob W. Pietrak, Michael R. Burr, Gary S. Peterson, Brian C. Small, Brian C. |
author_facet |
Bledsoe, Jacob W. Pietrak, Michael R. Burr, Gary S. Peterson, Brian C. Small, Brian C. |
author_sort |
Bledsoe, Jacob W. |
title |
Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
title_short |
Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
title_full |
Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
title_fullStr |
Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
title_full_unstemmed |
Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
title_sort |
additional file 2 of functional feeds marginally alter immune expression and microbiota of atlantic salmon (salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain |
publisher |
figshare |
publishDate |
2022 |
url |
https://dx.doi.org/10.6084/m9.figshare.19342952 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Functional_feeds_marginally_alter_immune_expression_and_microbiota_of_Atlantic_salmon_Salmo_salar_gut_gill_and_skin_mucosa_though_evidence_of_tissue-specific_signatures_and_host_microbe_coadaptation_remain/19342952 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.1186/s42523-022-00173-0 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.19342952 https://doi.org/10.1186/s42523-022-00173-0 |
_version_ |
1766362834104483840 |