Additional file 2 of Functional feeds marginally alter immune expression and microbiota of Atlantic salmon (Salmo salar) gut, gill, and skin mucosa though evidence of tissue-specific signatures and host–microbe coadaptation remain

Additional file 2: Table S1. Top 50 keystone gut microbiota identified through network analysis; Table S2. Top 50 keystone gill microbiota identified through network analysis; Table S3. Top 50 keystone skin microbiota identified through network analysis; Table S4. Differentially abundant inferred me...

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Bibliographic Details
Main Authors: Bledsoe, Jacob W., Pietrak, Michael R., Burr, Gary S., Peterson, Brian C., Small, Brian C.
Format: Dataset
Language:unknown
Published: figshare 2022
Subjects:
Microbiology
FOS Biological sciences
Genetics
Physiology
Ecology
Immunology
FOS Clinical medicine
69999 Biological Sciences not elsewhere classified
Inorganic Chemistry
FOS Chemical sciences
Atlantic salmon
Salmo salar
Online Access:https://dx.doi.org/10.6084/m9.figshare.19342952.v1
https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Functional_feeds_marginally_alter_immune_expression_and_microbiota_of_Atlantic_salmon_Salmo_salar_gut_gill_and_skin_mucosa_though_evidence_of_tissue-specific_signatures_and_host_microbe_coadaptation_remain/19342952/1
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Summary:Additional file 2: Table S1. Top 50 keystone gut microbiota identified through network analysis; Table S2. Top 50 keystone gill microbiota identified through network analysis; Table S3. Top 50 keystone skin microbiota identified through network analysis; Table S4. Differentially abundant inferred metagenomic KEGG Orthologs (KO) across mucosal tissues; Table S5. Differentially abundant inferred metagenomic KEGG Enzyme Commission (EC) codes across mucosal tissues; Table S6. Differentially abundant inferred metagenomic MetaCyc pathways across mucosal tissues; Table S7. Primer sequences used for RT-qPCR. Primers with listed references were taken from previously published literature, after confirming specificity in-silico, and all other primers were designed using NCBI Primer-BLAST with the listed accession as the target. NCBI accessions are taken from RefSeq where possible, with those accessions denoted by * coming from GenBank.

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