BLASTN Analysis Results Files
BLASTN Analysis Results Files The Salmo salar soluble Toll-like receptor 5 (sTLR5) sequence was found in the Stephen et al. paper with a linked accession number. This accession number took us to the NIH website where we were able to download the CDS sequence of the sTLR5 as a FASTA file. The Salmo s...
Main Authors: | , , , |
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Format: | Dataset |
Language: | unknown |
Published: |
figshare
2022
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Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.19333238.v1 https://figshare.com/articles/dataset/BLASTN_Analysis_Results_Files/19333238/1 |
Summary: | BLASTN Analysis Results Files The Salmo salar soluble Toll-like receptor 5 (sTLR5) sequence was found in the Stephen et al. paper with a linked accession number. This accession number took us to the NIH website where we were able to download the CDS sequence of the sTLR5 as a FASTA file. The Salmo salar sTLR5 was then used to run a BLASTN analysis against each species cDNA on Ensembl Genome Browser 105. The search sensitivity was set to "Normal." We then identified hits with a high percent Identity and an e-value of 0.0, making sure that the hits were in fact different genes (different subject name and location in genome). These hits were then saved as a FASTA using their CDS. They were then uploaded into AliView and aligned using MUSCLE. |
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