Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon)
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) Amino acid (AA) coding sequences for the TLR5 genes were input into the online server Protein Homology/analogy Recognition Engine V 2.0 (Phyre2)....
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ftdatacite:10.6084/m9.figshare.19330547.v1 2023-05-15T15:30:59+02:00 Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) Lofts, Brandon Ramirez, Elizabeth vasquez, delbert Tang, Xiaolu 2022 https://dx.doi.org/10.6084/m9.figshare.19330547.v1 https://figshare.com/articles/figure/Figure_3_Homology_models_of_soluble_and_insoluble_Toll-like_Receptor_5_TLR5_for_Oncorhynchus_mykiss_Rainbow_Trout_and_Salmo_salar_Atlantic_Salmon_/19330547/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.19330547 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60102 Bioinformatics FOS Computer and information sciences Image ImageObject Figure graphic 2022 ftdatacite https://doi.org/10.6084/m9.figshare.19330547.v1 https://doi.org/10.6084/m9.figshare.19330547 2022-04-01T14:46:32Z Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) Amino acid (AA) coding sequences for the TLR5 genes were input into the online server Protein Homology/analogy Recognition Engine V 2.0 (Phyre2). Phyre2 generated pdb files that were then uploaded to ChimeraX, which was used for the visualization and analysis of the molecular structures shown. Results from HMMER (Figure 1) and Mixed Effects Model of Evolution (MEME) analyses were used in this modeling. The HMMER analysis provided the AA regions that contain the leucine rich repeat (LRR), Toll-interleukin-1 Receptor ( TIR), and Transmembrane (TM) domains. The MEME analysis hypothesized 24 sites of positive/diversifying selection. Structural regions are colored as follows: LRR in blue, TIR domain in green, TM in orange, sites of positive selection in magenta. Still Image Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60102 Bioinformatics FOS Computer and information sciences |
spellingShingle |
60102 Bioinformatics FOS Computer and information sciences Lofts, Brandon Ramirez, Elizabeth vasquez, delbert Tang, Xiaolu Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
topic_facet |
60102 Bioinformatics FOS Computer and information sciences |
description |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) Amino acid (AA) coding sequences for the TLR5 genes were input into the online server Protein Homology/analogy Recognition Engine V 2.0 (Phyre2). Phyre2 generated pdb files that were then uploaded to ChimeraX, which was used for the visualization and analysis of the molecular structures shown. Results from HMMER (Figure 1) and Mixed Effects Model of Evolution (MEME) analyses were used in this modeling. The HMMER analysis provided the AA regions that contain the leucine rich repeat (LRR), Toll-interleukin-1 Receptor ( TIR), and Transmembrane (TM) domains. The MEME analysis hypothesized 24 sites of positive/diversifying selection. Structural regions are colored as follows: LRR in blue, TIR domain in green, TM in orange, sites of positive selection in magenta. |
format |
Still Image |
author |
Lofts, Brandon Ramirez, Elizabeth vasquez, delbert Tang, Xiaolu |
author_facet |
Lofts, Brandon Ramirez, Elizabeth vasquez, delbert Tang, Xiaolu |
author_sort |
Lofts, Brandon |
title |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
title_short |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
title_full |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
title_fullStr |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
title_full_unstemmed |
Figure 3 | Homology models of soluble and insoluble Toll-like Receptor 5 (TLR5) for Oncorhynchus mykiss (Rainbow Trout) and Salmo salar (Atlantic Salmon) |
title_sort |
figure 3 | homology models of soluble and insoluble toll-like receptor 5 (tlr5) for oncorhynchus mykiss (rainbow trout) and salmo salar (atlantic salmon) |
publisher |
figshare |
publishDate |
2022 |
url |
https://dx.doi.org/10.6084/m9.figshare.19330547.v1 https://figshare.com/articles/figure/Figure_3_Homology_models_of_soluble_and_insoluble_Toll-like_Receptor_5_TLR5_for_Oncorhynchus_mykiss_Rainbow_Trout_and_Salmo_salar_Atlantic_Salmon_/19330547/1 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.19330547 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.19330547.v1 https://doi.org/10.6084/m9.figshare.19330547 |
_version_ |
1766361473969291264 |