An improved high quality genome assembly of turbot (Scophthalmus maximus)
Turbot ( Scophthalmus maximus ), commercially important flatfish species, is widely cultivated in Europe and China. Here, we present an improved high-quality chromosome-scale genome assembly of turbot using a combination of PacBio long-read and Illumina short-read sequencing technologies. turbot_WW....
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ftdatacite:10.6084/m9.figshare.17702072 2023-05-15T18:15:41+02:00 An improved high quality genome assembly of turbot (Scophthalmus maximus) zheng, weiwei 2022 https://dx.doi.org/10.6084/m9.figshare.17702072 https://figshare.com/articles/dataset/An_improved_high_quality_genome_assembly_of_turbot_Scophthalmus_maximus_/17702072 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60408 Genomics FOS Biological sciences Dataset dataset 2022 ftdatacite https://doi.org/10.6084/m9.figshare.17702072 2022-03-10T12:00:01Z Turbot ( Scophthalmus maximus ), commercially important flatfish species, is widely cultivated in Europe and China. Here, we present an improved high-quality chromosome-scale genome assembly of turbot using a combination of PacBio long-read and Illumina short-read sequencing technologies. turbot_WW.gff is the annotation file of the turbot genome assembly. functional annotation of protein-coding genes.xls is the result of functional annotation of protein-coding genes using various databases. turbot_gene.TPM is the gene expression matrix used for gene co-expression network inference. genes per module.xlsx is gene IDs in every co-expression module. hub genes set.xlsx is the list of hub genes for every co-expression module. DEGs set.xlsx is the list of differential expression genes for each stress. GO enrichment.xlsx and KEGG enrichment.xlsx are the results of function enrichment for genes in co-expression modules that extremely significant correlated with each stress. key hub genes.xlsx is the list of candidate stress-related key hub genes generated by taking the intersection of hub gene set and DEGs set. Dataset Scophthalmus maximus Turbot DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60408 Genomics FOS Biological sciences |
spellingShingle |
60408 Genomics FOS Biological sciences zheng, weiwei An improved high quality genome assembly of turbot (Scophthalmus maximus) |
topic_facet |
60408 Genomics FOS Biological sciences |
description |
Turbot ( Scophthalmus maximus ), commercially important flatfish species, is widely cultivated in Europe and China. Here, we present an improved high-quality chromosome-scale genome assembly of turbot using a combination of PacBio long-read and Illumina short-read sequencing technologies. turbot_WW.gff is the annotation file of the turbot genome assembly. functional annotation of protein-coding genes.xls is the result of functional annotation of protein-coding genes using various databases. turbot_gene.TPM is the gene expression matrix used for gene co-expression network inference. genes per module.xlsx is gene IDs in every co-expression module. hub genes set.xlsx is the list of hub genes for every co-expression module. DEGs set.xlsx is the list of differential expression genes for each stress. GO enrichment.xlsx and KEGG enrichment.xlsx are the results of function enrichment for genes in co-expression modules that extremely significant correlated with each stress. key hub genes.xlsx is the list of candidate stress-related key hub genes generated by taking the intersection of hub gene set and DEGs set. |
format |
Dataset |
author |
zheng, weiwei |
author_facet |
zheng, weiwei |
author_sort |
zheng, weiwei |
title |
An improved high quality genome assembly of turbot (Scophthalmus maximus) |
title_short |
An improved high quality genome assembly of turbot (Scophthalmus maximus) |
title_full |
An improved high quality genome assembly of turbot (Scophthalmus maximus) |
title_fullStr |
An improved high quality genome assembly of turbot (Scophthalmus maximus) |
title_full_unstemmed |
An improved high quality genome assembly of turbot (Scophthalmus maximus) |
title_sort |
improved high quality genome assembly of turbot (scophthalmus maximus) |
publisher |
figshare |
publishDate |
2022 |
url |
https://dx.doi.org/10.6084/m9.figshare.17702072 https://figshare.com/articles/dataset/An_improved_high_quality_genome_assembly_of_turbot_Scophthalmus_maximus_/17702072 |
genre |
Scophthalmus maximus Turbot |
genre_facet |
Scophthalmus maximus Turbot |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.17702072 |
_version_ |
1766188868089937920 |