Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis)
Additional file 2 Table S1: Homologues-based transcript-phenotype list Table S2-S3: Analysis results for the modules in the middle network and moulting network, including module size, enriched GO terms with smallest p-values, p-values of enrichment analyses based on homologues, module preservation Z...
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ftdatacite:10.6084/m9.figshare.17037501.v1 2023-05-15T15:32:38+02:00 Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) Zhou, Zhaoran Eichner, Christiane Nilsen, Frank Jonassen, Inge Dondrup, Michael 2021 https://dx.doi.org/10.6084/m9.figshare.17037501.v1 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_A_novel_approach_to_co-expression_network_analysis_identifies_modules_and_genes_relevant_for_moulting_and_development_in_the_Atlantic_salmon_louse_Lepeophtheirus_salmonis_/17037501/1 unknown figshare https://dx.doi.org/10.1186/s12864-021-08054-7 https://dx.doi.org/10.6084/m9.figshare.17037501 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Genetics FOS Biological sciences dataset Dataset 2021 ftdatacite https://doi.org/10.6084/m9.figshare.17037501.v1 https://doi.org/10.1186/s12864-021-08054-7 https://doi.org/10.6084/m9.figshare.17037501 2022-02-08T14:10:01Z Additional file 2 Table S1: Homologues-based transcript-phenotype list Table S2-S3: Analysis results for the modules in the middle network and moulting network, including module size, enriched GO terms with smallest p-values, p-values of enrichment analyses based on homologues, module preservation Zsummary, number of known moulting-associated genes, proportion of TF and DE genes. Table S4: Analysis results for the modules in the global network, including module size, enriched GO terms with smallest p-values, p-values of enrichment analyses based on homologues, regularized logistic regression coefficients, number of known moulting-associated genes, proportion of TF and DE genes. Table S5-S7: Module assignment results for the known moulting-associated transcripts in the middle, moulting and global network; the ranks of these transcripts based on three types of centrality measurements within modules; whether they were intramodular hubs or not. Table S8: Two types of RIF scores for the transcripts annotated as transcription factors Table S9-S11: Centrality measurements, average ranks and annotations for the nodes in three selected modules (yellowgreen, steelblue and violet). Table S12: Annotations of the nodes with highest average ranks from the selected modules. Table S13: Available RNAi results for nodes from the eight selected important modules and nodes with high average ranks from modules without passing any criteria. Dataset Atlantic salmon DataCite Metadata Store (German National Library of Science and Technology) Rif ENVELOPE(-16.172,-16.172,66.526,66.526) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Genetics FOS Biological sciences |
spellingShingle |
Genetics FOS Biological sciences Zhou, Zhaoran Eichner, Christiane Nilsen, Frank Jonassen, Inge Dondrup, Michael Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
topic_facet |
Genetics FOS Biological sciences |
description |
Additional file 2 Table S1: Homologues-based transcript-phenotype list Table S2-S3: Analysis results for the modules in the middle network and moulting network, including module size, enriched GO terms with smallest p-values, p-values of enrichment analyses based on homologues, module preservation Zsummary, number of known moulting-associated genes, proportion of TF and DE genes. Table S4: Analysis results for the modules in the global network, including module size, enriched GO terms with smallest p-values, p-values of enrichment analyses based on homologues, regularized logistic regression coefficients, number of known moulting-associated genes, proportion of TF and DE genes. Table S5-S7: Module assignment results for the known moulting-associated transcripts in the middle, moulting and global network; the ranks of these transcripts based on three types of centrality measurements within modules; whether they were intramodular hubs or not. Table S8: Two types of RIF scores for the transcripts annotated as transcription factors Table S9-S11: Centrality measurements, average ranks and annotations for the nodes in three selected modules (yellowgreen, steelblue and violet). Table S12: Annotations of the nodes with highest average ranks from the selected modules. Table S13: Available RNAi results for nodes from the eight selected important modules and nodes with high average ranks from modules without passing any criteria. |
format |
Dataset |
author |
Zhou, Zhaoran Eichner, Christiane Nilsen, Frank Jonassen, Inge Dondrup, Michael |
author_facet |
Zhou, Zhaoran Eichner, Christiane Nilsen, Frank Jonassen, Inge Dondrup, Michael |
author_sort |
Zhou, Zhaoran |
title |
Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
title_short |
Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
title_full |
Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
title_fullStr |
Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
title_full_unstemmed |
Additional file 2 of A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis) |
title_sort |
additional file 2 of a novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the atlantic salmon louse (lepeophtheirus salmonis) |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.17037501.v1 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_A_novel_approach_to_co-expression_network_analysis_identifies_modules_and_genes_relevant_for_moulting_and_development_in_the_Atlantic_salmon_louse_Lepeophtheirus_salmonis_/17037501/1 |
long_lat |
ENVELOPE(-16.172,-16.172,66.526,66.526) |
geographic |
Rif |
geographic_facet |
Rif |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_relation |
https://dx.doi.org/10.1186/s12864-021-08054-7 https://dx.doi.org/10.6084/m9.figshare.17037501 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.17037501.v1 https://doi.org/10.1186/s12864-021-08054-7 https://doi.org/10.6084/m9.figshare.17037501 |
_version_ |
1766363133101735936 |