Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ...
Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons....
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2021
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ftdatacite:10.6084/m9.figshare.14227951.v1 2024-03-31T07:52:10+00:00 Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. 2021 https://dx.doi.org/10.6084/m9.figshare.14227951.v1 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Chromosome-length_genome_assembly_and_structural_variations_of_the_primal_Basenji_dog_Canis_lupus_familiaris_genome/14227951/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.14227951 https://dx.doi.org/10.1038/ncomms16082 https://dx.doi.org/10.1086/650372 https://dx.doi.org/10.1126/science.1243650 https://dx.doi.org/10.1186/s12864-017-4318-x https://dx.doi.org/10.1038/nrg.2017.67 https://dx.doi.org/10.1371/journal.pgen.1004016 https://dx.doi.org/10.1038/s41467-020-14515-6 https://dx.doi.org/10.1038/cr.2015.147 https://dx.doi.org/10.1016/j.cub.2018.08.041 https://dx.doi.org/10.1016/j.celrep.2017.03.079 https://dx.doi.org/10.1111/j.1748-5827.1979.tb06680.x https://dx.doi.org/10.1038/nature04338 https://dx.doi.org/10.1371/journal.pone.0091172 https://dx.doi.org/10.1101/gr.083741.108 https://dx.doi.org/10.1038/s41587-019-0072-8 https://dx.doi.org/10.1073/pnas.1604560113 https://dx.doi.org/10.1101/gr.214270.116 https://dx.doi.org/10.1371/journal.pone.0112963 https://dx.doi.org/10.1016/j.cels.2018.01.001 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified dataset Dataset 2021 ftdatacite https://doi.org/10.6084/m9.figshare.14227951.v110.6084/m9.figshare.1422795110.1038/ncomms1608210.1086/65037210.1126/science.124365010.1186/s12864-017-4318-x10.1038/nrg.2017.6710.1371/journal.pgen.100401610.1038/s41467-020-14515-610.1038/cr.2015.14710.1016 2024-03-04T13:24:14Z Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC. ... Dataset Canis lupus DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified |
spellingShingle |
Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
topic_facet |
Medicine Genetics FOS Biological sciences Evolutionary Biology Environmental Sciences not elsewhere classified Ecology Biological Sciences not elsewhere classified |
description |
Additional file 2: Supplementary Table 1. Assembly statistics for China assembly stages and other dog genomes used in the study. Supplementary Table 2. Diploidocus statistics and ratings for China scaffolds during tidying. Supplementary Table 3. GeMoMa summary statistics and annotation comparisons. Supplementary Table 4. AMY2B short read mapping and estimated copy number in Basenji dogs. Supplementary Table 5. CanFam_Bas nuclear mitochondrial sequence (NUMT) fragments. Supplementary Table 6. CanFam_Bas nuclear mitochondrial sequences (NUMTs) merging fragments within 8 kb. Supplementary Table 7. Structural variant calls for Basenji and German Shepherd long read data versus three reference genomes. Supplementary Table 8. Dog breeds used for read mapping and SNV analysis. Supplementary Table 9. SRA runs for representative dog breeds from DBVDC. ... |
format |
Dataset |
author |
Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. |
author_facet |
Edwards, Richard J. Field, Matt A. Ferguson, James M. Dudchenko, Olga Keilwagen, Jens Rosen, Benjamin D. Johnson, Gary S. Rice, Edward S. Hillier, La Deanna Hammond, Jillian M. Towarnicki, Samuel G. Omer, Arina Khan, Ruqayya Skvortsova, Ksenia Bogdanovic, Ozren Zammit, Robert A. Aiden, Erez Lieberman Warren, Wesley C. Ballard, J. William O. |
author_sort |
Edwards, Richard J. |
title |
Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_short |
Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_full |
Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_fullStr |
Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_full_unstemmed |
Additional file 2 of Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome ... |
title_sort |
additional file 2 of chromosome-length genome assembly and structural variations of the primal basenji dog (canis lupus familiaris) genome ... |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.14227951.v1 https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Chromosome-length_genome_assembly_and_structural_variations_of_the_primal_Basenji_dog_Canis_lupus_familiaris_genome/14227951/1 |
genre |
Canis lupus |
genre_facet |
Canis lupus |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.14227951 https://dx.doi.org/10.1038/ncomms16082 https://dx.doi.org/10.1086/650372 https://dx.doi.org/10.1126/science.1243650 https://dx.doi.org/10.1186/s12864-017-4318-x https://dx.doi.org/10.1038/nrg.2017.67 https://dx.doi.org/10.1371/journal.pgen.1004016 https://dx.doi.org/10.1038/s41467-020-14515-6 https://dx.doi.org/10.1038/cr.2015.147 https://dx.doi.org/10.1016/j.cub.2018.08.041 https://dx.doi.org/10.1016/j.celrep.2017.03.079 https://dx.doi.org/10.1111/j.1748-5827.1979.tb06680.x https://dx.doi.org/10.1038/nature04338 https://dx.doi.org/10.1371/journal.pone.0091172 https://dx.doi.org/10.1101/gr.083741.108 https://dx.doi.org/10.1038/s41587-019-0072-8 https://dx.doi.org/10.1073/pnas.1604560113 https://dx.doi.org/10.1101/gr.214270.116 https://dx.doi.org/10.1371/journal.pone.0112963 https://dx.doi.org/10.1016/j.cels.2018.01.001 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.6084/m9.figshare.14227951.v110.6084/m9.figshare.1422795110.1038/ncomms1608210.1086/65037210.1126/science.124365010.1186/s12864-017-4318-x10.1038/nrg.2017.6710.1371/journal.pgen.100401610.1038/s41467-020-14515-610.1038/cr.2015.14710.1016 |
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